R-Wright-1 / kraken_metaphlan_comparisonLinks
R markdown documents copied from other folders on Dec 15th 2021
☆14Updated 2 years ago
Alternatives and similar repositories for kraken_metaphlan_comparison
Users that are interested in kraken_metaphlan_comparison are comparing it to the libraries listed below
Sorting:
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆31Updated 4 months ago
- Set of utilities on sequences and BAM files☆27Updated 3 years ago
- Bacterial GWAS analysis☆40Updated last month
- ☆20Updated 9 months ago
- Calculate assocations between genes and traits☆23Updated 3 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆28Updated 8 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 4 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆59Updated last week
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆25Updated 2 months ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆37Updated 3 weeks ago
- Pipeline for metagenome and metatranscriptome joint assembly☆21Updated 2 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆19Updated last year
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 2 weeks ago
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆45Updated last month
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆28Updated 2 years ago
- Microbial agile accurate SNP Typer☆29Updated last year
- MAG Circularization Method☆33Updated 3 years ago
- Gene Absence Presence Identification tool.☆26Updated 3 months ago
- Predict plasmids from uncorrected long read data☆40Updated 5 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 2 months ago
- Gene-flank analysis tool☆27Updated 6 months ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆51Updated 2 months ago
- MAGScoT - a MAG scoring and refinement tool☆35Updated 8 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆22Updated 3 years ago
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 2 years ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆22Updated 2 weeks ago
- ☆18Updated 3 years ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago