R-Wright-1 / kraken_metaphlan_comparison
R markdown documents copied from other folders on Dec 15th 2021
☆14Updated last year
Alternatives and similar repositories for kraken_metaphlan_comparison:
Users that are interested in kraken_metaphlan_comparison are comparing it to the libraries listed below
- Set of utilities on sequences and BAM files☆26Updated 3 years ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆26Updated 2 weeks ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆18Updated 10 months ago
- whole genome MLST analysis☆40Updated 9 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆26Updated 3 months ago
- Phylogeny Enhanded Prediction of PAN-genome☆40Updated 4 years ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated 3 weeks ago
- Gene-flank analysis tool☆27Updated 2 months ago
- IslandPath standalone software☆31Updated last year
- Calculate confidence scores from Kraken2 output☆21Updated last year
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- ☆19Updated 5 months ago
- Discover and annotate the virome☆36Updated 4 months ago
- MAG Circularization Method☆33Updated 2 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆32Updated 2 months ago
- TAXnomic Profile Aggregation and STAndardisation☆35Updated 3 months ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆56Updated last month
- Pipeline for metagenome and metatranscriptome joint assembly☆20Updated last year
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆25Updated 2 years ago
- Bacterial GWAS analysis☆36Updated 2 months ago
- GTDB taxonomy taxdump files with trackable TaxIds☆52Updated 9 months ago
- SCAPP is a plasmid assembly tool. This tool is described in our paper: https://microbiomejournal.biomedcentral.com/articles/10.1186/s4016…☆31Updated last year
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes to select representatives for comparative genomics and met…☆43Updated this week
- A toolkit for prokaryotic comparative genomics☆41Updated 3 weeks ago
- Calculate assocations between genes and traits☆22Updated 3 months ago
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Genomewide Epistasis Analysis on Bacteria☆14Updated 5 months ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- 🔬🐛 Rapid 16s rRNA identification from isolate FASTQ files☆23Updated 6 years ago