R-Wright-1 / kraken_metaphlan_comparisonLinks
R markdown documents copied from other folders on Dec 15th 2021
☆14Updated 2 years ago
Alternatives and similar repositories for kraken_metaphlan_comparison
Users that are interested in kraken_metaphlan_comparison are comparing it to the libraries listed below
Sorting:
- Ley Lab MetaGenome Profiler DataBase generator☆49Updated 2 years ago
- Discover and annotate the virome☆53Updated this week
- Gene-flank analysis tool☆30Updated 9 months ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆62Updated 2 years ago
- Phylogeny Enhanded Prediction of PAN-genome☆42Updated 5 years ago
- Bacterial GWAS analysis☆44Updated 2 months ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- GTDB taxonomy taxdump files with trackable TaxIds☆55Updated 5 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆26Updated 3 years ago
- MetaGeneMark-2: Improved Gene Prediction in Metagenomes☆22Updated last year
- MAGScoT - a MAG scoring and refinement tool☆37Updated last year
- Metagenomic Estimation of Dietary Intake and Content.☆33Updated 5 months ago
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆33Updated 3 weeks ago
- whole genome MLST analysis☆48Updated 3 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆42Updated 4 years ago
- ☆40Updated 4 years ago
- Phasing for metagenomics using PacBio long reads☆16Updated 4 years ago
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆41Updated last week
- Microbiome classification pipeline☆65Updated 4 months ago
- MAG Circularization Method☆32Updated 3 years ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆63Updated last week
- A toolkit for prokaryotic comparative genomics☆51Updated last week
- Identify phage regions in bacterial genomes for masking purposes☆34Updated 6 years ago
- A tool for removing redundant genomes from a set of assemblies☆77Updated last month
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆24Updated this week
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆28Updated 5 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆48Updated 6 months ago
- Calculate assocations between genes and traits☆28Updated 7 months ago
- ☆18Updated 3 years ago