R-Wright-1 / kraken_metaphlan_comparisonLinks
R markdown documents copied from other folders on Dec 15th 2021
☆14Updated last month
Alternatives and similar repositories for kraken_metaphlan_comparison
Users that are interested in kraken_metaphlan_comparison are comparing it to the libraries listed below
Sorting:
- Ley Lab MetaGenome Profiler DataBase generator☆50Updated 3 years ago
- CroCoDeEL is a tool that detects cross-sample contamination in shotgun metagenomic data☆24Updated 4 months ago
- Calculate assocations between genes and traits☆29Updated 9 months ago
- ☆20Updated last year
- SynTracker is a pipeline, designated to determine the biological relatedness of conspecific strains (microbial strains of the same specie…☆38Updated 3 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆46Updated 2 years ago
- Metagenomic Estimation of Dietary Intake and Content.☆36Updated 8 months ago
- Bacterial GWAS analysis☆46Updated 2 months ago
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆32Updated 3 weeks ago
- Read mapping pipeline for detection and measurement of virus pathogens from metagenomic or clinical data☆48Updated last week
- Phylogeny Enhanded Prediction of PAN-genome☆43Updated 5 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- GTDB taxonomy taxdump files with trackable TaxIds☆56Updated 8 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- Automatic eukaryotic taxonomic classification☆29Updated 7 months ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆27Updated 3 years ago
- Snakemake pipeline for downstream analysis of metagenome-assembled genomes (MAGs) (pronounced mag-pie)☆61Updated 2 years ago
- Order and orientation of complete bacterial genomes☆29Updated 5 months ago
- Gene-flank analysis tool☆34Updated last year
- MAG Circularization Method☆32Updated last month
- Improvement of metagenome-assembled genomes☆54Updated 5 years ago
- Recombination-free trees☆64Updated 3 months ago
- Meteor is a plateform for quantitative metagenomics profiling of complex ecosystems. Meteor relies on genes catalogue to perform species-…☆32Updated last week
- Split Kmer Analysis☆66Updated 3 years ago
- Predicting plasmid contigs from assemblies using single copy marker genes, plasmid genes, kmers - Developed by Linda van der Graaf☆50Updated last year
- PLSDB pipeline to collect bacterial plasmids from NCBI☆39Updated last year
- A surveillance-oriented tool to strengthen the linkage between pathogen genetic clusters and epidemiological data☆47Updated 2 months ago
- EzAAI - High Throughput Prokaryotic AAI Calculator☆45Updated 4 months ago
- KEGG Module Evaluation Tool☆32Updated 2 years ago
- Discover and annotate the virome☆56Updated 2 months ago