MTD: a unique pipeline for host and meta-transcriptome joint and integrative analyses of RNA-seq data
☆18Jul 15, 2025Updated 10 months ago
Alternatives and similar repositories for MTD
Users that are interested in MTD are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Predictive models and analysis of cancer prognosis and drug response using primary tumor microbial abundances derived from WGS and RNA-se…☆18Nov 13, 2024Updated last year
- MicrobiomeReview☆11Jun 6, 2023Updated 2 years ago
- Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes☆23Nov 24, 2025Updated 6 months ago
- ☆93Sep 3, 2024Updated last year
- gNOMO2 allows integrated multi-omics analyses of microbiomes☆15Aug 7, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- R markdown documents copied from other folders on Dec 15th 2021☆14Nov 4, 2025Updated 6 months ago
- R package for computing alpha and beta contributional diversity metrics☆11May 5, 2023Updated 3 years ago
- OHMI: The Ontology of Host-Microbiome Interactions☆12May 14, 2026Updated last week
- ☆20Aug 10, 2022Updated 3 years ago
- ☆18Oct 13, 2023Updated 2 years ago
- a novel encoding method for viral identification in metagenomics☆15Sep 20, 2023Updated 2 years ago
- a user-friendly and flexible pipeline for prokaryote genome analysis☆68Mar 17, 2026Updated 2 months ago
- Pan-cancer mycobiome atlas☆32Oct 7, 2022Updated 3 years ago
- A shiny package for microbiome functional enrichment analysis☆42Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆12Dec 4, 2023Updated 2 years ago
- Pipeline for the generation and simulation of personalized Flux Balance Analysis models☆11Feb 14, 2021Updated 5 years ago
- Analysis framework for integrating gut microbiome and host gene expression data☆36Apr 25, 2022Updated 4 years ago
- Tools and utilities for running Dockerized metagenomics tools in the Cloud☆22Apr 8, 2019Updated 7 years ago
- Antibiotic resistance genes (ARGs) have accelerated microbial threats to human health during the last decade. Here we determined the risk…☆19Apr 8, 2022Updated 4 years ago
- GPU-accelerated DNA barcode classification☆14Jan 2, 2025Updated last year
- A modular end-to-end suite for in silico recovery, clustering, and analysis of prokaryotic, microeukaryotic, and viral genomes from metag…☆102Apr 27, 2026Updated 3 weeks ago
- ☆13Jun 23, 2021Updated 4 years ago
- Single Cell multimodal data scripts for downloading datasets☆18Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆31Sep 15, 2023Updated 2 years ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆13Jan 24, 2023Updated 3 years ago
- Scripts to quality control for metagenomic raw data, including removing the adapters, low quality reads, bases or PCR duplicates☆18Aug 13, 2020Updated 5 years ago
- 现代应用统计 Modern Applied Statistics with R, INLA and Stan☆26May 12, 2026Updated 2 weeks ago
- Analysis pipeline for our circSC manuscript☆14May 18, 2022Updated 4 years ago
- 微生信生物☆24Mar 17, 2025Updated last year
- metagenome population recombination rate estimation pipeline☆12Nov 23, 2025Updated 6 months ago
- Code for the identification step for CSI-Microbes☆31Nov 25, 2024Updated last year
- Sparse Cooccurence Network Investigation for Compositional data☆25Feb 1, 2026Updated 3 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆28May 19, 2026Updated last week
- Workflow to assign Taxonomy to a bacteriophage genome isolate☆40Apr 20, 2026Updated last month
- A web app for environmental DNA metabarcoding analysis☆11Dec 30, 2021Updated 4 years ago
- Time-stratified case-crossover studies for aggregated data in environmental epidemiology: a tutorial☆12Jul 25, 2025Updated 10 months ago
- 使用表达数据，对候选基因进行特征选择，然后构建诊断/预后模型，并使用SHAP分析特征的贡献策划的怒☆17Oct 16, 2025Updated 7 months ago
- Fast tool to build the core genome of prokaryotic genomes. Can handle large datasets. Dependencis: Usearch & Numpy☆10Nov 26, 2025Updated 6 months ago
- ☆10Dec 16, 2024Updated last year