Rust implementation of VG handle graph
☆19Dec 18, 2023Updated 2 years ago
Alternatives and similar repositories for rs-handlegraph
Users that are interested in rs-handlegraph are comparing it to the libraries listed below
Sorting:
- ☆15Jun 29, 2021Updated 4 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 9 months ago
- GFA parser in Rust☆30May 26, 2023Updated 2 years ago
- Multiple sequence alignment of long tandem repeats☆25Jan 9, 2026Updated last month
- ☆18May 10, 2023Updated 2 years ago
- Next Index to Query Kmer Intersection☆17Feb 1, 2023Updated 3 years ago
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Dec 24, 2021Updated 4 years ago
- ☆18Jan 29, 2025Updated last year
- ☆29Mar 27, 2024Updated last year
- GBZ file format for pangenome graphs☆46Feb 18, 2026Updated 2 weeks ago
- A toolkit for exploring regions of variation in pangenomes☆14Feb 14, 2026Updated 2 weeks ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- Simple succinct data structures (in Rust)☆54Feb 12, 2026Updated 3 weeks ago
- GFA visualizer, GPU-accelerated using Vulkan☆76Aug 2, 2022Updated 3 years ago
- ☆16Aug 25, 2025Updated 6 months ago
- The PanGenome Graph Builder☆16Jul 17, 2024Updated last year
- generating hardware accelerators for pangenomic graph queries☆40Feb 26, 2026Updated last week
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆12Apr 16, 2019Updated 6 years ago
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Feb 13, 2023Updated 3 years ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 3 years ago
- Rust package for constructing and analyzing phylogenies. (unpolished & unmaintained)☆15May 1, 2025Updated 10 months ago
- Statistics and analysis for variation graphs☆49Dec 17, 2024Updated last year
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆36May 14, 2025Updated 9 months ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50May 22, 2024Updated last year
- Joint structural variant and copy number variant caller for HiFi sequencing data☆70Nov 4, 2025Updated 4 months ago
- Optimal sequence-to-graph alignment with recombinations☆40Jul 25, 2025Updated 7 months ago
- A web-based, interactive pangenome visualization tool☆21Apr 10, 2023Updated 2 years ago
- Library for the Handle Graph abstraction☆24Jan 15, 2026Updated last month
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆61Feb 25, 2026Updated last week
- implicit pangenome graph☆90Updated this week
- guix packages for bioinformatics software☆23Jan 22, 2024Updated 2 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated 7 months ago
- A simple C++17 header-only library for generating SVG plots☆10Mar 17, 2024Updated last year
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 7 months ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago