Alternatives and similar repositories for rs-handlegraph

Users that are interested in rs-handlegraph are comparing it to the libraries listed below

• jeizenga / centrolign
  Multiple sequence alignment of long tandem repeats
  ☆16Updated 2 months ago
• ekg / HLA-zoo
  genome variation graphs constructed from HLA GRCh38 ALTs
  ☆23Updated 3 years ago
• chfi / rs-gfa-utils
  ☆16Updated 3 years ago
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated last week
• jltsiren / gbwt-rs
  GBWT in Rust
  ☆43Updated 2 months ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆24Updated 4 months ago
• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated 8 months ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated last year
• ekg / dozyg
  sequence to graph mapper
  ☆11Updated 4 years ago
• pangenome / pgge
  the pangenome graph evaluator
  ☆26Updated 4 years ago
• marschall-lab / gaftools
  General purpose utility related to GAF files
  ☆28Updated last week
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 4 years ago
• HopedWall / rs-gfatovcf
  Rust implementation of Flavia95's GFAtoVCF
  ☆16Updated 3 years ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆40Updated 5 months ago
• chfi / gfainject
  ☆16Updated 2 years ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆51Updated last month
• shenwei356 / wfa
  Wavefront alignment algorithm (WFA) in Golang
  ☆29Updated 7 months ago
• AlgoLab / RecGraph
  Optimal sequence-to-graph alignment with recombinations
  ☆32Updated 3 months ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• w-gao / pgv
  A web-based, interactive pangenome visualization tool
  ☆21Updated 2 years ago
• AntonBankevich / jumboDB
  De Bruijn graph construction for large k.
  ☆18Updated 3 years ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 2 years ago
• pangenome / impg
  implicit pangenome graph
  ☆61Updated this week
• fawaz-dabbaghieh / bubble_gun
  ☆41Updated last month
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆33Updated 4 years ago
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆24Updated last month
• VGP / vgp-tools
  ☆28Updated last month
• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆50Updated this week
• dubssieg / pancat
  Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions
  ☆34Updated 3 weeks ago
• chfi / rs-gfa
  GFA parser in Rust
  ☆31Updated 2 years ago