Malfoy / NIQKILinks
Next Index to Query Kmer Intersection
☆16Updated 2 years ago
Alternatives and similar repositories for NIQKI
Users that are interested in NIQKI are comparing it to the libraries listed below
Sorting:
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆26Updated 2 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- Minimum plain text representation of kmer sets☆17Updated 6 months ago
- syncmer graphs, and perhaps other sorts of sequence graphs☆21Updated 4 months ago
- ☆14Updated 4 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated last year
- Generate kmers/minimizers/hashes/MinHash signatures, including with multiple kmer sizes.☆24Updated 4 years ago
- ☆14Updated 9 years ago
- ☆16Updated 2 years ago
- ☆25Updated 4 years ago
- Contains the description of a file format to store kmers and associated values☆32Updated 2 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆12Updated 6 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Updated 8 months ago
- Utilities to detect and profile `het-kmers`☆11Updated last year
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 4 years ago
- convert variation graph alignments to coverage maps over nodes☆24Updated last month
- RabbitMash: an efficient highly optimized implementation of Mash.☆21Updated last year
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆20Updated 2 weeks ago
- ☆28Updated 4 months ago
- ☆12Updated 2 months ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Updated 5 years ago
- ☆11Updated 2 years ago
- Code for the paper Aligning Distant Sequences to Graphs using Long Seed Sketches.☆13Updated 2 years ago
- GBWT-based handle graph☆31Updated last month
- Indel-aware consensus for aligned BAM☆21Updated 4 months ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago
- Extracts subgraphs or components from a graph in GFA format☆23Updated 8 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆45Updated 10 months ago