Next Index to Query Kmer Intersection
☆17Feb 1, 2023Updated 3 years ago
Alternatives and similar repositories for NIQKI
Users that are interested in NIQKI are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Iterate k-min-mers from a DNA sequence in Rust☆13Apr 8, 2024Updated last year
- ☆14Oct 14, 2020Updated 5 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50May 22, 2024Updated last year
- Minimum plain text representation of kmer sets☆16Jan 30, 2025Updated last year
- syncmer graphs, and perhaps other sorts of sequence graphs☆30Updated this week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Jun 26, 2024Updated last year
- A rust wrapper for the spoa C++ partial order alignment library☆10Jun 11, 2025Updated 9 months ago
- ☆19May 10, 2023Updated 2 years ago
- Filter of Pairwise Alignement☆44Jan 31, 2022Updated 4 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 7 years ago
- ☆15Apr 6, 2016Updated 9 years ago
- ntHash implementation in Rust☆36Jul 12, 2024Updated last year
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- Host depletion optimised for clinical metagenomic sequencing applications☆16Nov 18, 2024Updated last year
- ProphAsm – a rapid computation of simplitigs directly from k-mer sets☆25Feb 17, 2023Updated 3 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 4 years ago
- vector illustrations of BWT based searching on small strings☆16Apr 29, 2019Updated 6 years ago
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Mar 13, 2025Updated last year
- Sketch-based surveillance platform☆14Dec 17, 2024Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Aug 4, 2021Updated 4 years ago
- ☆24Apr 2, 2021Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- De Bruijn graph representation in low memory☆35Jul 6, 2024Updated last year
- Automated strain separation of low-complexity metagenomes☆52Nov 10, 2021Updated 4 years ago
- FM-index representation of a de Bruijn graph☆26Aug 7, 2017Updated 8 years ago
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆96Updated this week
- find likely coding segments in DNA using composition-normalised hexamer tables☆18Oct 18, 2024Updated last year
- Compare different genome alignment tools using a wide range of genomes with different complexities.☆14Dec 3, 2022Updated 3 years ago
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆20Nov 24, 2024Updated last year
- Fast and exact gap-affine partial order alignment☆59Feb 3, 2026Updated last month
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆13Apr 16, 2019Updated 6 years ago
- End-to-end encrypted email - Proton Mail • AdSpecial offer: 40% Off Yearly / 80% Off First Month. All Proton services are open source and independently audited for security.
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 5 years ago
- fast, multithreaded sourmash operations: search, compare, and gather.☆25Mar 16, 2026Updated last week
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆24Nov 20, 2025Updated 4 months ago
- C implementation of the Landau-Vishkin algorithm☆35Apr 8, 2022Updated 3 years ago
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- REINDEER REad Index for abuNDancE quERy☆56Jul 6, 2025Updated 8 months ago
- Contains the description of a file format to store kmers and associated values☆34Aug 17, 2022Updated 3 years ago