generating hardware accelerators for pangenomic graph queries
☆45Jul 1, 2026Updated 3 months ago
Alternatives and similar repositories for pollen
Users that are interested in pollen are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40Aug 20, 2026Updated last month
- ☆15Jun 29, 2021Updated 5 years ago
- GFA visualizer, GPU-accelerated using Vulkan☆80Aug 2, 2022Updated 4 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆15Apr 28, 2026Updated 5 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆11Feb 20, 2024Updated 2 years ago
- Assemblies from HPP Year 1 production☆83May 9, 2023Updated 3 years ago
- ☆19May 10, 2023Updated 3 years ago
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- ☆18Jan 29, 2025Updated last year
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 3 months ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 4 years ago
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆25Feb 16, 2026Updated 7 months ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆251Sep 16, 2026Updated 3 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- use variant nesting information to flter overlapping sites from vg deconstruct output☆37Jun 12, 2025Updated last year
- UniSparse: An Intermediate Language for General Sparse Format Customization (OOPSLA'24)☆35Nov 12, 2024Updated last year
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Test sets and pipeline scripts for pan-genomic graph analysis☆18Jan 30, 2025Updated last year
- implicit pangenome graph☆114Updated this week
- Statistics and analysis for variation graphs☆55Dec 17, 2024Updated last year
- Verilog AST☆19Dec 2, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- A collection of datapath circuit design and verification benchmarks☆19Aug 24, 2026Updated last month
- Hop-Wise Graph Attention for Scalable and Generalizable Learning on Circuits☆35Aug 25, 2024Updated 2 years ago
- ☆144Aug 26, 2026Updated last month
- Graph Learning at Scale: Characterizing and Optimizing Pre-Propagation GNNs (MLSys'25)☆19Apr 4, 2025Updated last year
- GBWT-based handle graph☆36Aug 19, 2026Updated last month
- ☆102Apr 22, 2024Updated 2 years ago
- A Generic Distributed Auto-Tuning Infrastructure☆24Jul 29, 2021Updated 5 years ago
- convert a multi-sample VCF file to a multiple sequence alignment (C)☆15Feb 15, 2019Updated 7 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Enumerating bubbles in pangenome graphs☆16Updated this week
- linearize and simplify variation graphs using blocked partial order alignment☆67Aug 21, 2026Updated last month
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 11 months ago
- GFA parser in Rust☆30May 26, 2023Updated 3 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆24Dec 24, 2021Updated 4 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆47Oct 13, 2024Updated last year