vgteam / libhandlegraph

Related projects ⓘ

Alternatives and complementary repositories for libhandlegraph

• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆30Updated this week
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆33Updated 3 years ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆51Updated 2 years ago
• maickrau / MBG
  ☆57Updated this week
• jermp / fulgor
  Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆43Updated this week
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆31Updated 3 weeks ago
• pangenome / smoothxg
  linearize and simplify variation graphs using blocked partial order alignment
  ☆56Updated 3 weeks ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• vgteam / gssw
  efficient alignment of strings to partially ordered string graphs
  ☆33Updated 2 years ago
• vgteam / libbdsg
  Optimized sequence graph implementations for graph genomics
  ☆33Updated last week
• AndreaGuarracino / paf2chain
  convert PAF format to CHAIN format
  ☆26Updated 6 months ago
• VGP / vgp-tools
  ☆28Updated last year
• langmead-lab / vargas
  ☆25Updated 3 years ago
• ekg / viral-assembly
  exploring viral genome assembly with variation graph tools
  ☆19Updated 4 years ago
• karel-brinda / ococo
  Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.
  ☆47Updated 5 years ago
• rvaser / rala
  Layout module for raw de novo genome assembly of long uncorrected reads.
  ☆21Updated 3 years ago
• esteinig / sketchy
  Genomic neighbor typing of bacterial pathogens using MinHash
  ☆44Updated last year
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 7 months ago
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆35Updated last year
• Malfoy / Blight
  De Bruijn graph representation in low memory
  ☆36Updated 4 months ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆33Updated last year
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated 5 months ago
• benedictpaten / sonLib
  Small general purpose library for C and Python with focus on bioinformatics.
  ☆29Updated 2 years ago
• chfi / rs-wfa
  Rust bindings to the wavefront algorithm C implementation
  ☆18Updated 2 years ago
• jltsiren / gbwt-rs
  GBWT in Rust
  ☆42Updated 2 months ago
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 2 years ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆48Updated 3 years ago
• TravisWheelerLab / sufr
  Parallel Construction of Suffix Arrays in Rust
  ☆8Updated this week
• lh3 / rmaxcut
  An experimental tool to find approximate max-cuts in a large graph
  ☆11Updated 3 years ago
• Kmer-File-Format / kff-tools
  ☆17Updated last year