Alternatives and similar repositories for libhandlegraph

Users that are interested in libhandlegraph are comparing it to the libraries listed below

• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated 2 weeks ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆54Updated 3 years ago
• pangenome / smoothxg
  linearize and simplify variation graphs using blocked partial order alignment
  ☆58Updated 2 months ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆33Updated 4 years ago
• maickrau / MBG
  ☆62Updated last month
• vgteam / GetBlunted
  For bluntifying overlapped GFAs
  ☆13Updated 11 months ago
• seqan / raptor
  A fast and space-efficient pre-filter for querying very large collections of nucleotide sequences.
  ☆53Updated last week
• AndreaGuarracino / paf2chain
  convert PAF format to CHAIN format
  ☆30Updated 2 months ago
• chfi / rs-wfa
  Rust bindings to the wavefront algorithm C implementation
  ☆18Updated 2 years ago
• jltsiren / gbwt
  Substring index for paths in a graph
  ☆60Updated 3 months ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• benedictpaten / sonLib
  Small general purpose library for C and Python with focus on bioinformatics.
  ☆30Updated 2 years ago
• VGP / vgp-tools
  ☆28Updated 3 months ago
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 3 years ago
• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆37Updated 2 years ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 4 years ago
• jltsiren / gbwt-rs
  GBWT in Rust
  ☆43Updated 3 months ago
• esteinig / sketchy
  Genomic neighbor typing of bacterial pathogens using MinHash
  ☆44Updated 2 years ago
• rchikhi / rust-alignbench
  Pairwise nucleotide alignment benchmark of Rust bindings
  ☆31Updated last year
• Kmer-File-Format / kff-tools
  ☆17Updated 2 years ago
• arshajii / ema
  Fast & accurate alignment of barcoded short-reads
  ☆33Updated 2 years ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated 5 months ago
• rvaser / rala
  Layout module for raw de novo genome assembly of long uncorrected reads.
  ☆21Updated 4 years ago
• ndierckx / Sim-it
  Versatile simulator for structural variance and Nanopore/PacBio sequencing reads
  ☆27Updated last week
• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆51Updated this week
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated last year
• rob-p / FQFeeder
  Self-contained, multi-threaded fasta/q parser
  ☆45Updated 9 months ago
• langmead-lab / vargas
  ☆25Updated 4 years ago
• vgteam / libbdsg
  Optimized sequence graph implementations for graph genomics
  ☆34Updated this week