Alternatives and similar repositories for libhandlegraph

Users that are interested in libhandlegraph are comparing it to the libraries listed below

• ParBLiSS / PaSGAL
  Parallel Sequence to Graph Alignment
  ☆36Updated 3 years ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆50Updated last year
• ekg / HLA-zoo
  genome variation graphs constructed from HLA GRCh38 ALTs
  ☆23Updated 4 years ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 4 years ago
• jltsiren / gbwt-rs
  GBWT in Rust
  ☆43Updated 2 weeks ago
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆34Updated 5 years ago
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆32Updated 4 years ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated 2 weeks ago
• vgteam / libbdsg
  Optimized sequence graph implementations for graph genomics
  ☆34Updated 2 weeks ago
• VGP / vgp-tools
  ☆28Updated 8 months ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆55Updated 3 years ago
• alshai / levioSAM
  Lift-over alignments from variant-aware references
  ☆34Updated 2 years ago
• pangenome / smoothxg
  linearize and simplify variation graphs using blocked partial order alignment
  ☆59Updated 5 months ago
• Kmer-File-Format / kff-tools
  ☆16Updated 2 years ago
• algbio / themisto
  Space-efficient pseudoalignment with a colored de Bruijn graph
  ☆52Updated 9 months ago
• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated last year
• lh3 / lv89
  C implementation of the Landau-Vishkin algorithm
  ☆35Updated 3 years ago
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 6 months ago
• pangenome / pgge
  the pangenome graph evaluator
  ☆29Updated 4 years ago
• medvedevgroup / BubbZ
  ☆15Updated 5 years ago
• pangenome / pgvf-spec
  Pangenome Graph Variation Format (PGVF)
  ☆19Updated 5 years ago
• rcedgar / urmap
  URMAP ultra-fast read mapper
  ☆38Updated 5 years ago
• maxrossi91 / moni
  MONI: A Pangenomic Index for Finding MEMs
  ☆37Updated 9 months ago
• Flavia95 / VGpop
  Population genetics analysis on VG
  ☆16Updated 4 years ago
• langmead-lab / vargas
  ☆24Updated 4 months ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 4 years ago
• lh3 / pubLRasm
  ☆17Updated 4 years ago
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆26Updated 3 weeks ago
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated last year
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago