Library for the Handle Graph abstraction
☆24Jan 15, 2026Updated last month
Alternatives and similar repositories for libhandlegraph
Users that are interested in libhandlegraph are comparing it to the libraries listed below
Sorting:
- GBWT-based handle graph☆31Feb 11, 2026Updated 2 weeks ago
- Optimized sequence graph implementations for graph genomics☆34Feb 16, 2026Updated last week
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- Substring index for paths in a graph☆60Feb 10, 2026Updated 2 weeks ago
- RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)☆13Mar 20, 2024Updated last year
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55May 17, 2022Updated 3 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Dec 24, 2021Updated 4 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Pangenome graphs (review article on graph-based pangenomic methods)☆72Apr 15, 2020Updated 5 years ago
- SUPBUB is a tool that, in linear time, finds out superbubbles(special graph-structures) in a directed graph.☆12Sep 19, 2019Updated 6 years ago
- alignment to variation graph inducer☆157Jan 20, 2026Updated last month
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- extract MSAs from genome variation graphs☆34Sep 20, 2020Updated 5 years ago
- Paired reads mapping on de Bruijn graph☆13Jan 15, 2019Updated 7 years ago
- ☆24Aug 25, 2025Updated 6 months ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 4 years ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 4 years ago
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆234Feb 10, 2026Updated 2 weeks ago
- Adaptive semi-global banded alignment on string graphs☆66May 4, 2018Updated 7 years ago
- Statistics and analysis for variation graphs☆49Dec 17, 2024Updated last year
- Ruby library for handling GFA files☆17Jul 10, 2025Updated 7 months ago
- Graphical Fragment Assembly (GFA) Format Specification☆218Aug 21, 2024Updated last year
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- Multiple sequence alignment of long tandem repeats☆25Jan 9, 2026Updated last month
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50May 22, 2024Updated last year
- A bioinformatic toolkit to align genome assemblies into pangenome graphs☆121Jan 20, 2026Updated last month
- HTSlib bindings for Ruby☆11Jan 13, 2026Updated last month
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆37May 29, 2025Updated 9 months ago
- ☆12Aug 23, 2023Updated 2 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- ☆21Nov 1, 2019Updated 6 years ago
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆135Feb 22, 2026Updated last week
- GBZ file format for pangenome graphs☆45Feb 18, 2026Updated last week
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24May 30, 2024Updated last year
- efficient alignment of strings to partially ordered string graphs☆33Jan 31, 2022Updated 4 years ago
- guix packages for bioinformatics software☆23Jan 22, 2024Updated 2 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated 8 months ago