chfi / rs-wfaLinks
Rust bindings to the wavefront algorithm C implementation
☆17Updated 3 years ago
Alternatives and similar repositories for rs-wfa
Users that are interested in rs-wfa are comparing it to the libraries listed below
Sorting:
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- convert variation graph alignments to coverage maps over nodes☆26Updated last week
- GBWT in Rust☆43Updated 7 months ago
- Pairwise nucleotide alignment benchmark of Rust bindings☆30Updated 2 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆26Updated 6 months ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 4 months ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Updated 3 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- ☆17Updated 4 years ago
- Benchmarking pairwise aligners☆36Updated 8 months ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- ☆17Updated 2 years ago
- Iterate k-min-mers from a DNA sequence in Rust☆13Updated last year
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 5 months ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆17Updated 6 years ago
- MONI: A Pangenomic Index for Finding MEMs☆37Updated 7 months ago
- ☆14Updated 5 years ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- Optimal sequence-to-graph alignment with recombinations☆38Updated 3 months ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Updated 2 years ago
- Rust crate with bindings and interface to the SPOA library for generating consensus sequences.☆11Updated 6 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Library for the Handle Graph abstraction☆24Updated this week
- A long read simulator based on badread idea☆22Updated 3 years ago
- Utilities to detect and profile `het-kmers`☆11Updated last year
- Contains the description of a file format to store kmers and associated values☆33Updated 3 years ago
- A read alignment visualization library for long reads☆10Updated 3 years ago
- Next Index to Query Kmer Intersection☆16Updated 2 years ago
- ☆16Updated 2 years ago