Alternatives and similar repositories for rust-alignbench:

Users that are interested in rust-alignbench are comparing it to the libraries listed below

• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 7 months ago
• pairwise-alignment / pa-bench
  Benchmarking pairwise aligners
  ☆36Updated last week
• jeizenga / wfalm
  Refinements of the WFA alignment algorithm with better complexity
  ☆26Updated 2 years ago
• rust-seq / minimizer-iter
  Iterate over minimizers of a DNA sequence
  ☆27Updated 7 months ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• cschin / wavefront-aln
  A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring
  ☆15Updated last year
• chfi / rs-gfa
  GFA parser in Rust
  ☆30Updated last year
• luizirber / nthash
  ntHash implementation in Rust
  ☆35Updated 7 months ago
• jltsiren / gbwt-rs
  GBWT in Rust
  ☆42Updated 2 months ago
• ocxtal / dozeu
  SIMD-parallel BLAST X-drop DP on sequence graphs
  ☆24Updated 8 months ago
• RagnarGrootKoerkamp / minimizers
  Reference implementations of minimizer schemes to go with the mod-minimizers paper.
  ☆23Updated this week
• chfi / rs-wfa
  Rust bindings to the wavefront algorithm C implementation
  ☆18Updated 2 years ago
• jguhlin / minimap2-rs
  Rust bindings to minimap2 library
  ☆87Updated last month
• smarco / BiWFA-paper
  Bidirectional WFA (Paper)
  ☆44Updated 9 months ago
• annalam / seqkit
  Toolkit for manipulating FASTA and SAM files
  ☆17Updated 11 months ago
• moold / kseq-rs
  A FASTA/FASTQ format parser library
  ☆20Updated 11 months ago
• esteinig / scrubby
  Host depletion optimised for clinical metagenomic sequencing applications
  ☆14Updated 3 months ago
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated this week
• jermp / fulgor
  Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆49Updated this week
• natir / rustyread
  A long read simulator based on badread idea
  ☆20Updated 2 years ago
• esteinig / sketchy
  Genomic neighbor typing of bacterial pathogens using MinHash
  ☆44Updated 2 years ago
• shenwei356 / strobemers
  A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
  ☆14Updated 3 years ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated last week
• vgteam / libbdsg
  Optimized sequence graph implementations for graph genomics
  ☆34Updated 2 months ago
• broadinstitute / poasta
  Fast and exact gap-affine partial order alignment
  ☆47Updated 2 months ago
• ratschlab / Project2020-seq-tensor-sketching
  ☆8Updated 3 years ago
• suchapalaver / krust
  Bioinformatics 101 tool for counting unique k-length substrings in DNA
  ☆30Updated last year
• pangenome / smoothxg
  linearize and simplify variation graphs using blocked partial order alignment
  ☆58Updated last week
• langmead-lab / vargas
  ☆25Updated 3 years ago