rchikhi / rust-alignbenchLinks
Pairwise nucleotide alignment benchmark of Rust bindings
☆30Updated 2 years ago
Alternatives and similar repositories for rust-alignbench
Users that are interested in rust-alignbench are comparing it to the libraries listed below
Sorting:
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated last year
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Benchmarking pairwise aligners☆36Updated 9 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆27Updated 6 months ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Rust bindings to the wavefront algorithm C implementation☆17Updated 3 years ago
- Fast and exact gap-affine partial order alignment☆56Updated this week
- GBWT in Rust☆43Updated 7 months ago
- Optimal sequence-to-graph alignment with recombinations☆38Updated 3 months ago
- A SIMD-accelerated library to compute random minimizers☆33Updated last month
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- ntHash implementation in Rust☆36Updated last year
- A FASTA/FASTQ format parser library☆20Updated last year
- A long read simulator based on badread idea☆22Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Compacted and colored de Bruijn graph construction and querying☆84Updated 2 weeks ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- FMSI is a highly memory efficient exact k-mer set index based on masked superstrings and the masked Burrows-Wheeler transform☆20Updated 2 weeks ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated last year
- convert variation graph alignments to coverage maps over nodes☆26Updated last week
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆55Updated last week
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆32Updated 2 years ago
- Generate random test data for bioinformatics☆26Updated last year
- Rust library for processing sequencing reads.☆25Updated last year
- GFA parser in Rust☆30Updated 2 years ago
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 3 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 5 months ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 5 months ago
- A "Navie" Implementation of the Wavefront Algorithm For Sequence Alignment with Gap-Affine Scoring☆14Updated 2 years ago