rchikhi / rust-alignbenchLinks
Pairwise nucleotide alignment benchmark of Rust bindings
☆30Updated 2 years ago
Alternatives and similar repositories for rust-alignbench
Users that are interested in rust-alignbench are comparing it to the libraries listed below
Sorting:
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated last year
- Benchmarking pairwise aligners☆36Updated 9 months ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆27Updated 7 months ago
- Iterate over minimizers of a DNA sequence☆31Updated last year
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- GBWT in Rust☆43Updated 8 months ago
- Fast and exact gap-affine partial order alignment☆56Updated 3 weeks ago
- A FASTA/FASTQ format parser library☆20Updated last year
- A SIMD-accelerated library to compute random minimizers☆33Updated 2 weeks ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated last year
- Optimal sequence-to-graph alignment with recombinations☆38Updated 4 months ago
- A Rust library providing fully dynamic sets of k-mers with high locality☆46Updated last year
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆32Updated 2 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Rust bindings to the wavefront algorithm C implementation☆17Updated 3 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆57Updated last week
- ntHash implementation in Rust☆36Updated last year
- A long read simulator based on badread idea☆22Updated 3 years ago
- GFA parser in Rust☆30Updated 2 years ago
- Generate random test data for bioinformatics☆26Updated last year
- Rust library for processing sequencing reads.☆25Updated last year
- Compacted and colored de Bruijn graph construction and querying☆85Updated this week
- Space-efficient pseudoalignment with a colored de Bruijn graph☆52Updated 8 months ago
- Filter of Pairwise Alignement☆44Updated 3 years ago
- Wavefront alignment algorithm (WFA) in Golang☆32Updated 4 months ago
- Bidirectional WFA (Paper)☆48Updated last year
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- SAPLING: Suffix Array Piecewise Linear INdex for Genomics☆25Updated 5 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 6 months ago
- ☆14Updated 5 years ago