ekg / mmmulti
memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort
☆27Updated 4 years ago
Alternatives and similar repositories for mmmulti:
Users that are interested in mmmulti are comparing it to the libraries listed below
- A tool for merging large BWTs☆26Updated 4 years ago
- Bit packed vector of integral values☆27Updated 3 months ago
- Header-only, gzread-like reader for gzip, bz2, and xz.☆12Updated 6 years ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆43Updated last year
- COBS - Compact Bit-Sliced Signature Index (for Genomic k-Mer Data or q-Grams)☆84Updated last year
- 📖 🧬 SSHash is a compressed, associative, exact, and weighted dictionary for k-mers.☆84Updated last week
- Relative data structures based on the BWT☆12Updated 7 years ago
- BWT Text Indexing Library: a set of tools to work with BWT-based text indexes☆25Updated 3 years ago
- Wavelet tree based on a fixed block boosting technique☆16Updated 3 years ago
- An experimental tool to find approximate max-cuts in a large graph☆11Updated 4 years ago
- Prefix Free Parsing☆8Updated last year
- Fast and cache-efficient full-text pangenome index☆27Updated last month
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Updated 5 years ago
- ♥ Essential Functions for DNA Manipulation☆19Updated 3 weeks ago
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆40Updated 3 months ago
- A hash map using the BooPHF perfect hash function☆12Updated 8 years ago
- Run-length compressed BWT with LZ77 sampled suffix array☆10Updated 3 years ago
- Simply feedforward neural network☆19Updated 8 years ago
- Practical Dynamic de Bruijn Graphs☆18Updated 4 years ago
- Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index☆81Updated last year
- Implementation of a Backpack Quotient Filter☆11Updated 9 months ago
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated 11 months ago
- External memory suffix array construction using inducing☆11Updated 4 years ago
- modified from gitlab.com/manzai/Big-BWT to support fasta files☆9Updated 3 months ago
- FM-index representation of a de Bruijn graph☆27Updated 7 years ago
- ☆25Updated 4 years ago
- Efficient construction of the BWT using string compression☆17Updated 6 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- A python toolkit for building and querying multi-string BWTs☆27Updated 8 years ago