6br / hgb
A read alignment visualization library for long reads
☆11Updated 2 years ago
Related projects ⓘ
Alternatives and complementary repositories for hgb
- sequence to graph mapper☆11Updated 3 years ago
- the pangenome graph evaluator☆23Updated 3 years ago
- ☆9Updated 9 months ago
- recompute GFA link overlaps☆25Updated 2 years ago
- convert variation graph alignments to coverage maps over nodes☆21Updated last week
- Pangenome Graph Variation Format (PGVF)☆18Updated 4 years ago
- Scripts to split reference and run mummer in parallel on an SGE cluster☆11Updated 8 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆22Updated 2 years ago
- A long read simulator based on badread idea☆20Updated 2 years ago
- Scaffolding with assembly likelihood optimization☆20Updated 3 years ago
- Population genetics analysis on VG☆16Updated 3 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 5 years ago
- This repo is deprecated. Please use gfatools instead.☆16Updated 6 years ago
- ☆15Updated 4 years ago
- Generate interactive dotplot from mummer4 output using plotly☆25Updated 4 years ago
- ☆16Updated 2 years ago
- GFA insert into GenomicSQLite☆48Updated 3 years ago
- ☆12Updated 3 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Utilities to detect and profile `het-kmers`☆11Updated 3 months ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 4 months ago
- Align subreads to ccs reads☆13Updated last year
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆19Updated 2 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆16Updated 5 years ago
- ☆25Updated 3 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆34Updated 9 months ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆13Updated 4 years ago
- An algorithm for centromere assembly using long error-prone reads☆26Updated 3 years ago
- Filter of Pairwise Alignement☆44Updated 2 years ago