A read alignment visualization library for long reads
☆10Aug 6, 2022Updated 3 years ago
Alternatives and similar repositories for hgb
Users that are interested in hgb are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- ☆11Feb 20, 2024Updated 2 years ago
- A toolkit for exploring regions of variation in pangenomes☆14Updated this week
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆15Feb 20, 2023Updated 3 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆15Jun 29, 2021Updated 4 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Dec 24, 2021Updated 4 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- ☆18Jan 29, 2025Updated last year
- A command line tool (in Kotlin/JVM) for intuitively visualizing BAM alignments. (Currently unmaintained)☆11Jan 7, 2024Updated 2 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- guix packages for bioinformatics software☆23Jan 22, 2024Updated 2 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- extract MSAs from genome variation graphs☆34Mar 24, 2026Updated 2 months ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- This is a library C/Python/CLI for working with TAF (.taf,.taf.gz) and MAF (.maf) alignment files☆32May 15, 2026Updated last week
- Centromere mapping and annotation pipeline☆25May 1, 2026Updated 3 weeks ago
- Refinements of the WFA alignment algorithm with better complexity☆26Mar 31, 2022Updated 4 years ago
- cross-platform Rust API for memory mapped IO☆10Sep 25, 2020Updated 5 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- Efficient C functions to compute the summary statistics (flagstats) for sequencing read sets.☆15Dec 16, 2019Updated 6 years ago
- Test sets and pipeline scripts for pan-genomic graph analysis☆17Jan 30, 2025Updated last year
- convert PAF format to CHAIN format☆36May 14, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)☆13Mar 20, 2024Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆38May 4, 2026Updated 2 weeks ago
- linearize and simplify variation graphs using blocked partial order alignment☆62Mar 31, 2026Updated last month
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 6 months ago
- An R package to detect, classify, and visualize genome rearrangements☆15Aug 4, 2020Updated 5 years ago
- ☆11Dec 9, 2022Updated 3 years ago
- generating hardware accelerators for pangenomic graph queries☆43Updated this week
- ☆18Apr 28, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Long Approximate Matches-based Split Aligner☆13Apr 6, 2017Updated 9 years ago
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆46Oct 13, 2024Updated last year
- ☆31Mar 27, 2024Updated 2 years ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Apr 9, 2026Updated last month
- building a human pangenome from the HPRCy1v2 genbank accessioned assemblies☆15Feb 13, 2023Updated 3 years ago
- Panache is a web-based interface designed for the visualization of linearized pangenomes. It can be used to show presence/absence informa…☆48Jun 7, 2023Updated 2 years ago
- Everything but the kitchen sink☆13Feb 6, 2025Updated last year