6br / hgbLinks
A read alignment visualization library for long reads
☆10Updated 3 years ago
Alternatives and similar repositories for hgb
Users that are interested in hgb are comparing it to the libraries listed below
Sorting:
- convert variation graph alignments to coverage maps over nodes☆24Updated 2 months ago
- Extracts subgraphs or components from a graph in GFA format☆24Updated 10 months ago
- recompute GFA link overlaps☆25Updated 3 years ago
- ☆17Updated 7 months ago
- Utilities to detect and profile `het-kmers`☆11Updated last year
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- GFA insert into GenomicSQLite☆48Updated 4 years ago
- Pangenome Graph Variation Format (PGVF)☆19Updated 4 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Updated 6 years ago
- your friendly pangenome graph genotyper☆10Updated 2 years ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated 3 months ago
- ☆17Updated 2 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 3 months ago
- Rust implementation of Flavia95's GFAtoVCF☆16Updated 3 years ago
- ☆22Updated last week
- ☆24Updated 3 weeks ago
- A framework for extracting telomeric reads from single-molecule sequencing experiments, describing their sequence variation and motifs, a…☆16Updated last year
- ☆25Updated last month
- GBWT-based handle graph☆31Updated 2 months ago
- ☆16Updated 3 years ago
- GBWT in Rust☆42Updated 5 months ago
- Rust bindings to the wavefront algorithm C implementation☆17Updated 3 years ago
- Multiple sequence alignment of long tandem repeats☆20Updated last month
- Population genetics analysis on VG☆16Updated 4 years ago
- Long-read aligner to pangenome graphs☆26Updated last year
- the pangenome graph evaluator☆28Updated 4 years ago
- extract MSAs from genome variation graphs☆33Updated 5 years ago
- ☆15Updated 4 years ago
- base-level dotplots from PAF alignments☆26Updated last month