Alternatives and similar repositories for hgb

Users that are interested in hgb are comparing it to the libraries listed below

• brettChapman / paf2pav
  ☆9Updated last year
• pangenome / gafpack
  convert variation graph alignments to coverage maps over nodes
  ☆24Updated last month
• pangenome / pgvf-spec
  Pangenome Graph Variation Format (PGVF)
  ☆20Updated 4 years ago
• fawaz-dabbaghieh / gfa_subgraphs
  Extracts subgraphs or components from a graph in GFA format
  ☆23Updated 8 months ago
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 4 years ago
• chfi / gfainject
  ☆16Updated 2 years ago
• ekg / gimbricate
  recompute GFA link overlaps
  ☆25Updated 2 years ago
• ekg / HLA-zoo
  genome variation graphs constructed from HLA GRCh38 ALTs
  ☆23Updated 3 years ago
• thegenemyers / PHASE-MERS
  Utilities to detect and profile `het-kmers`
  ☆11Updated last year
• nlhepler / spoa-rs
  A rust wrapper for the spoa C++ partial order alignment library
  ☆10Updated 2 months ago
• pangenome / gfagino
  your friendly pangenome graph genotyper
  ☆10Updated 2 years ago
• hanzou666 / msa2gfa
  A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg
  ☆12Updated 6 years ago
• pangenome / pgge
  the pangenome graph evaluator
  ☆27Updated 4 years ago
• fritzsedlazeck / nibSV
  Kmer based genotyper for short reads.
  ☆23Updated 3 years ago
• Flavia95 / VGpop
  Population genetics analysis on VG
  ☆16Updated 4 years ago
• at-cg / PanAligner
  Long read aligner for cyclic and acyclic pangenome graphs
  ☆39Updated last year
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆26Updated 2 weeks ago
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆37Updated 2 months ago
• DecodeGenetics / LRcaller
  ☆16Updated 3 years ago
• AntonBankevich / jumboDB
  De Bruijn graph construction for large k.
  ☆18Updated 3 years ago
• chfi / rs-wfa
  Rust bindings to the wavefront algorithm C implementation
  ☆18Updated 2 years ago
• ban-m / jtk
  JTK -- a regional diploid genome assembler
  ☆24Updated 9 months ago
• ldenti / palss
  ☆21Updated last month
• ryought / mummer-idotplot
  Generate interactive dotplot from mummer4 output using plotly
  ☆27Updated 5 years ago
• HopedWall / rs-gfatovcf
  Rust implementation of Flavia95's GFAtoVCF
  ☆16Updated 3 years ago
• WHops / NAHRwhals
  R package and wrapper functions for identifying serial structural variations from genome assemblies
  ☆27Updated 10 months ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated last month
• jltsiren / gbwt-rs
  GBWT in Rust
  ☆43Updated 4 months ago
• chfi / pafview
  ☆17Updated 6 months ago
• langmead-lab / vargas
  ☆25Updated 4 years ago