Alternatives and similar repositories for guix-genomics:

Users that are interested in guix-genomics are comparing it to the libraries listed below

• chfi / rs-wfa
  Rust bindings to the wavefront algorithm C implementation
  ☆18Updated 2 years ago
• AndreaGuarracino / paf2chain
  convert PAF format to CHAIN format
  ☆27Updated 3 months ago
• vgteam / libhandlegraph
  Library for the Handle Graph abstraction
  ☆23Updated 2 weeks ago
• Flavia95 / VGpop
  Population genetics analysis on VG
  ☆17Updated 3 years ago
• jltsiren / gbwtgraph
  GBWT-based handle graph
  ☆31Updated last week
• edawson / svaha
  Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]
  ☆12Updated last year
• pangenome / pgvf-spec
  Pangenome Graph Variation Format (PGVF)
  ☆18Updated 4 years ago
• Malfoy / Blight
  De Bruijn graph representation in low memory
  ☆36Updated 8 months ago
• ekg / viral-assembly
  exploring viral genome assembly with variation graph tools
  ☆19Updated 4 years ago
• bcgsc / physlr
  Construct a Physical Map from Linked Reads
  ☆18Updated 11 months ago
• benedictpaten / sonLib
  Small general purpose library for C and Python with focus on bioinformatics.
  ☆30Updated 2 years ago
• chfi / pafview
  ☆17Updated last month
• mlin / gfabase
  GFA insert into GenomicSQLite
  ☆49Updated 3 years ago
• chfi / rs-gfa
  GFA parser in Rust
  ☆30Updated last year
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆25Updated 11 months ago
• pangenome / maffer
  extract MSAs from genome variation graphs
  ☆33Updated 4 years ago
• ekg / dozyg
  sequence to graph mapper
  ☆11Updated 4 years ago
• 6br / hgb
  A read alignment visualization library for long reads
  ☆11Updated 2 years ago
• COMBINE-lab / kmers
  A bit-packed k-mer representation (and relevant utilities) for rust
  ☆48Updated 9 months ago
• ekg / HLA-zoo
  genome variation graphs constructed from HLA GRCh38 ALTs
  ☆23Updated 3 years ago
• ekg / pafplot
  base-level dotplots from PAF alignments
  ☆23Updated 2 years ago
• richarddurbin / modimizer
  a toolset for fast DNA read set matching and assembly using a new type of reduced kmer
  ☆37Updated 3 years ago
• bcgsc / ntLink
  Minimizer-based assembly scaffolding and mapping using long reads
  ☆37Updated 5 months ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆37Updated last year
• pangenome / smoothxg
  linearize and simplify variation graphs using blocked partial order alignment
  ☆58Updated last month
• natir / fpa
  Filter of Pairwise Alignement
  ☆44Updated 3 years ago
• jltsiren / gbwt-rs
  GBWT in Rust
  ☆43Updated last week
• rvaser / rala
  Layout module for raw de novo genome assembly of long uncorrected reads.
  ☆21Updated 4 years ago
• refresh-bio / VCFShark
  ☆18Updated 2 years ago
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated last week