ekg / guix-genomicsLinks
guix packages for bioinformatics software
☆23Updated last year
Alternatives and similar repositories for guix-genomics
Users that are interested in guix-genomics are comparing it to the libraries listed below
Sorting:
- ☆28Updated 4 months ago
- ☆18Updated 3 years ago
- De Bruijn graph representation in low memory☆36Updated last year
- A Pedantic FASTA Parser and Tool Set☆14Updated 5 years ago
- exploring viral genome assembly with variation graph tools☆20Updated 5 years ago
- extract MSAs from genome variation graphs☆33Updated 4 years ago
- Construct a Physical Map from Linked Reads☆18Updated last year
- Example of SGTK application for E.coli dataset:☆32Updated 5 years ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 4 years ago
- Filter of Pairwise Alignement☆45Updated 3 years ago
- ☆47Updated 2 years ago
- Pangenome Graph Variation Format (PGVF)☆20Updated 4 years ago
- GBWT-based handle graph☆31Updated 2 months ago
- GRAph-based Finding of Individual Motif Occurrences☆31Updated last year
- Structural variant (SV) analysis tools☆36Updated last year
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- Economic Genome Assembly from Low Coverage Illumina and Nanopore Data☆20Updated 3 years ago
- Rust bindings to the wavefront algorithm C implementation☆18Updated 2 years ago
- FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…☆26Updated 3 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- Library for the Handle Graph abstraction☆24Updated this week
- URMAP ultra-fast read mapper☆39Updated 5 years ago
- Pipeline code for creating a fully haplotype-resolved assembly from a combination of PacBio/ONT long reads and Illumina Strand-seq data☆16Updated last year
- the pangenome graph evaluator☆28Updated 4 years ago
- ☆14Updated last year
- 🗻 Visualization of genome/gene sequence synteny☆40Updated last year
- Minimizer-based assembly scaffolding and mapping using long reads☆43Updated 10 months ago
- Proof-of-concept implementation of GWFA for sequence-to-graph alignment☆57Updated last year
- ☆17Updated last week