guix packages for bioinformatics software
☆23Jan 22, 2024Updated 2 years ago
Alternatives and similar repositories for guix-genomics
Users that are interested in guix-genomics are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- exploring viral genome assembly with variation graph tools☆20May 18, 2020Updated 5 years ago
- Population genetics analysis on VG☆17Apr 22, 2021Updated 4 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆10May 13, 2021Updated 4 years ago
- ☆16Aug 25, 2025Updated 7 months ago
- Rust bindings to the wavefront algorithm C implementation☆17Sep 20, 2022Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆11Dec 9, 2022Updated 3 years ago
- Concise Common Workflow Language☆29Mar 24, 2026Updated 3 weeks ago
- A LaTeX package for drawing genetic construct pictograms using TikZ.☆11Jan 26, 2022Updated 4 years ago
- extract MSAs from genome variation graphs☆34Mar 24, 2026Updated 3 weeks ago
- ☆30Mar 27, 2024Updated 2 years ago
- A read alignment visualization library for long reads☆10Aug 6, 2022Updated 3 years ago
- connect to a cisco anyconnect server with 2FA via web SSO on a headless server☆20Apr 13, 2021Updated 5 years ago
- Rust implementation of Flavia95's GFAtoVCF☆16Jan 17, 2022Updated 4 years ago
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Pangenome Graph Variation Format (PGVF)☆19Sep 24, 2020Updated 5 years ago
- ☆17Jan 5, 2021Updated 5 years ago
- Rust implementation of VG handle graph☆19Dec 18, 2023Updated 2 years ago
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- A varitation graph tool☆10Dec 23, 2019Updated 6 years ago
- An experimental tool to estimate the similarity between all pairs of contigs☆40Apr 12, 2021Updated 5 years ago
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Dec 24, 2021Updated 4 years ago
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 4 years ago
- ☆18Jan 29, 2025Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- alignment to variation graph inducer☆158Updated this week
- linearize and simplify variation graphs using blocked partial order alignment☆62Mar 31, 2026Updated 2 weeks ago
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 9 months ago
- A toolkit for exploring regions of variation in pangenomes☆14Feb 14, 2026Updated 2 months ago
- GFA parser in Rust☆30May 26, 2023Updated 2 years ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- DNA kmer operations for nim☆14Apr 24, 2022Updated 3 years ago
- Library for the Handle Graph abstraction☆24Jan 15, 2026Updated 3 months ago
- GBWT-based handle graph☆32Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- base-level dotplots from PAF alignments☆33Sep 18, 2025Updated 6 months ago
- RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)☆13Mar 20, 2024Updated 2 years ago
- Bioinformatics 101 tool for counting unique k-length substrings in DNA☆33Feb 17, 2026Updated last month
- ☆15Jun 29, 2021Updated 4 years ago
- GeneNetwork (2nd generation)☆38Updated this week
- R integration for edlib, a C/C++ library for pairwise sequence alignment using edit distance (Levenshtein distance).☆11Jul 20, 2025Updated 8 months ago
- Utilities to detect and profile `het-kmers`☆12Aug 5, 2024Updated last year