ekg / guix-genomics
guix packages for bioinformatics software
☆23Updated last year
Alternatives and similar repositories for guix-genomics:
Users that are interested in guix-genomics are comparing it to the libraries listed below
- Rust bindings to the wavefront algorithm C implementation☆18Updated 2 years ago
- convert PAF format to CHAIN format☆27Updated 2 months ago
- Bam Read Index - Extract alignments from a bam file by readname☆24Updated 9 months ago
- GBWT-based handle graph☆31Updated last week
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated 7 months ago
- ☆17Updated 3 weeks ago
- 🗻 Visualization of genome/gene sequence synteny☆37Updated last year
- Small general purpose library for C and Python with focus on bioinformatics.☆29Updated 2 years ago
- Construct a Physical Map from Linked Reads☆18Updated 10 months ago
- base-level dotplots from PAF alignments☆23Updated 2 years ago
- ☆27Updated 10 months ago
- GFA parser in Rust☆30Updated last year
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- Library for the Handle Graph abstraction☆23Updated 2 months ago
- exploring viral genome assembly with variation graph tools☆19Updated 4 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated 11 months ago
- A Pedantic FASTA Parser and Tool Set☆14Updated 4 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 2 years ago
- Fast and flexible tool for reading, modifying and writing biological sequences☆17Updated last month
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- fastest GTF/GFF-to-BED converter chilling around☆23Updated last month
- Example of SGTK application for E.coli dataset:☆31Updated 4 years ago
- PySeqArray: data manipulation of whole-genome sequencing variants with SeqArray files in Python (pre-release version)☆14Updated 7 years ago
- ☆28Updated last year
- ☆45Updated last year
- De Bruijn graph representation in low memory☆36Updated 7 months ago
- Population genetics analysis on VG☆17Updated 3 years ago
- ☆13Updated last month
- Minimizer-based assembly scaffolding and mapping using long reads☆36Updated 4 months ago
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 2 years ago