ekg / guix-genomics
guix packages for bioinformatics software
☆23Updated last year
Alternatives and similar repositories for guix-genomics:
Users that are interested in guix-genomics are comparing it to the libraries listed below
- Rust bindings to the wavefront algorithm C implementation☆18Updated 2 years ago
- convert PAF format to CHAIN format☆28Updated 4 months ago
- exploring viral genome assembly with variation graph tools☆19Updated 4 years ago
- ☆13Updated 3 months ago
- base-level dotplots from PAF alignments☆23Updated 2 years ago
- ☆17Updated 2 months ago
- a toolset for fast DNA read set matching and assembly using a new type of reduced kmer☆37Updated 3 years ago
- GBWT-based handle graph☆31Updated last month
- A Pedantic FASTA Parser and Tool Set☆14Updated 5 years ago
- Construct a Physical Map from Linked Reads☆18Updated last year
- 🗻 Visualization of genome/gene sequence synteny☆38Updated last year
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆12Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated 10 months ago
- Minimizer-based assembly scaffolding and mapping using long reads☆38Updated 6 months ago
- Population genetics analysis on VG☆17Updated 4 years ago
- Pangenome Graph Variation Format (PGVF)☆18Updated 4 years ago
- Bam Read Index - Extract alignments from a bam file by readname☆25Updated last year
- ☆18Updated 2 years ago
- ☆28Updated 2 weeks ago
- Small general purpose library for C and Python with focus on bioinformatics.☆30Updated 2 years ago
- the we-flyin WFA-guided ultralong tiling sequence aligner☆11Updated 3 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆57Updated this week
- Fast-SG: An alignment-free algorithm for ultrafast scaffolding graph construction from short or long reads.☆22Updated 6 years ago
- ☆46Updated 2 years ago
- Layout module for raw de novo genome assembly of long uncorrected reads.☆21Updated 4 years ago
- fastest GTF/GFF-to-BED converter chilling around☆25Updated 3 months ago
- De Bruijn graph representation in low memory☆36Updated 9 months ago
- ☆27Updated last year
- GFA parser in Rust☆31Updated last year
- Linear-time, low-memory construction of variation graphs☆20Updated 5 years ago