jltsiren / simple-sdsLinks
Simple succinct data structures (in Rust)
☆50Updated 8 months ago
Alternatives and similar repositories for simple-sds
Users that are interested in simple-sds are comparing it to the libraries listed below
Sorting:
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆129Updated 4 years ago
- Parallel Construction of Suffix Arrays in Rust☆25Updated 3 months ago
- Hardware go brrr bounded context suffix array construction algorithm☆18Updated last year
- PtrHash minimal perfect hash function, based of PTHash☆66Updated 2 weeks ago
- A very fast interval tree data structure☆123Updated 6 months ago
- ☆8Updated 3 years ago
- ☆22Updated 3 years ago
- Compacted and colored de Bruijn graph construction and querying☆84Updated this week
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated 2 years ago
- A Rust library for building modular, fast and compact indexes over genomic data☆13Updated last year
- A bit-packed k-mer representation (and relevant utilities) for rust☆48Updated last year
- GFA parser in Rust☆31Updated 2 years ago
- ntHash implementation in Rust☆36Updated last year
- SIMD-parallel BLAST X-drop DP on sequence graphs☆25Updated last year
- Fast approximate string searching☆45Updated last week
- A genomic minhashing implementation in Rust☆99Updated last month
- Rust library for processing sequencing reads.☆25Updated 11 months ago
- A Rust implementation of the Quad Wavelet Tree☆42Updated 2 months ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 3 years ago
- Rust bindings to minimap2 library☆101Updated 3 weeks ago
- Simple and transparent support for compressed files.☆76Updated 5 months ago
- A rust wrapper for the spoa C++ partial order alignment library☆10Updated last month
- Rust implementations of succinct data structures☆59Updated last week
- A SIMD-accelerated library to compute random minimizers☆33Updated 2 weeks ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆21Updated 2 years ago
- GBWT in Rust☆43Updated 4 months ago
- ☆11Updated 2 years ago
- FASTA and FASTQ parsing in Rust☆79Updated 4 months ago
- ☆51Updated 2 years ago
- Reference implementations of minimizer schemes to go with the mod-minimizers paper.☆25Updated 3 months ago