jltsiren / simple-sds
Simple succinct data structures (in Rust)
☆50Updated last month
Alternatives and similar repositories for simple-sds:
Users that are interested in simple-sds are comparing it to the libraries listed below
- Hardware go brrr bounded context suffix array construction algorithm☆17Updated last year
- Pairwise nucleotide alignment benchmark of Rust bindings☆31Updated last year
- Cute tricks for SIMD vectorized binary encoding and decoding of nucleotides, in Rust.☆116Updated 4 years ago
- Compacted and colored de Bruijn graph construction and querying☆79Updated this week
- Parallel Construction of Suffix Arrays in Rust☆22Updated this week
- SIMD-parallel BLAST X-drop DP on sequence graphs☆24Updated 7 months ago
- A Rust implementation of the Quad Wavelet Tree☆36Updated 7 months ago
- ☆8Updated 3 years ago
- GFA parser in Rust☆29Updated last year
- A very fast interval tree data structure☆113Updated 7 months ago
- Rust implementations of succinct data structures☆51Updated last month
- PTRHash minimal perfect hash function, based of PTHash☆39Updated last month
- Rust bindings to minimap2 library☆87Updated last week
- A compressed, associative, exact, and weighted dictionary for k-mers.☆86Updated 3 months ago
- Refinements of the WFA alignment algorithm with better complexity☆26Updated 2 years ago
- Alignment-based gene expression quantification☆27Updated 7 months ago
- A Rust interface for the Succinct Data Structure Library.☆14Updated 2 years ago
- A bit-packed k-mer representation (and relevant utilities) for rust☆47Updated 6 months ago
- ntHash implementation in Rust☆35Updated 6 months ago
- ☆21Updated 2 years ago
- BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing☆20Updated last year
- A genomic minhashing implementation in Rust☆93Updated last year
- GBWT in Rust☆42Updated last month
- Benchmarking different languages for a simple bioinformatics task (Counting the GC fraction of DNA in a FASTA file)☆57Updated last year
- Simple and transparent support for compressed files.☆76Updated 7 months ago
- Fast and cache-efficient full-text pangenome index☆27Updated this week
- FASTA and FASTQ parsing in Rust☆73Updated last year
- De Bruijn graphs in Rust☆65Updated 5 months ago
- A Rust library for building modular, fast and compact indexes over genomic data☆13Updated last year
- ☆27Updated 9 months ago