Alternatives and similar repositories for MBG

Users that are interested in MBG are comparing it to the libraries listed below

• pangenome / smoothxg
  linearize and simplify variation graphs using blocked partial order alignment
  ☆59Updated 5 months ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆42Updated last year
• ggonnella / gfaviz
  Graphical interactive tool for the visualization of sequence graphs in GFA format.
  ☆71Updated 6 years ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆55Updated 3 years ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆47Updated last year
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• pangenome / impg
  implicit pangenome graph
  ☆86Updated this week
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆126Updated 3 weeks ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆50Updated last month
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 7 months ago
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆54Updated 7 months ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆39Updated last year
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆55Updated last year
• univieCUBE / gepard
  Genome Pair Rapid Dotter
  ☆66Updated 4 years ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆95Updated last month
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆106Updated 4 months ago
• mrvollger / SafFire
  ☆31Updated 8 months ago
• koszullab / instaGRAAL
  Large genome reassembly based on Hi-C data, continuation of GRAAL
  ☆43Updated last year
• ablab / VerityMap
  ☆39Updated 2 years ago
• maickrau / ribotin
  ☆38Updated last week
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆50Updated 3 years ago
• seryrzu / unialigner
  ☆67Updated last year
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆47Updated 5 years ago
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆50Updated last year
• kjenike / panagram
  ☆68Updated 2 weeks ago
• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated last year
• mrvollger / NucFreq
  ☆38Updated 3 months ago
• kcleal / pywfa
  Python wrapper for wavefront alignment using WFA2-lib
  ☆38Updated last year
• bcgsc / LongStitch
  🪡Correct and scaffold assemblies using long reads
  ☆56Updated 4 months ago
• shilpagarg / WHdenovo
  ☆46Updated 5 years ago