☆63Sep 15, 2025Updated 10 months ago
Alternatives and similar repositories for MBG
Users that are interested in MBG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- recompute GFA link overlaps☆26Sep 14, 2022Updated 3 years ago
- ☆11Mar 4, 2025Updated last year
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- Extracting paths from assembly graphs☆24Jun 22, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆173Jul 1, 2026Updated 3 weeks ago
- ☆11Dec 9, 2022Updated 3 years ago
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆75Feb 19, 2019Updated 7 years ago
- ☆44Dec 29, 2025Updated 6 months ago
- Enumerating bubbles in pangenome graphs☆15Jul 15, 2026Updated last week
- ☆289Dec 29, 2025Updated 6 months ago
- ☆31Mar 27, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- ☆12Oct 13, 2021Updated 4 years ago
- alignment to variation graph inducer☆163Jun 17, 2026Updated last month
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆252Dec 16, 2025Updated 7 months ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 10 months ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆403Apr 22, 2026Updated 3 months ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- Improved Phased Assembler☆29Mar 11, 2022Updated 4 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- GFA visualizer, GPU-accelerated using Vulkan☆78Aug 2, 2022Updated 3 years ago
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40May 4, 2026Updated 2 months ago
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- Yet Another Chimeric Read Detector☆87Nov 7, 2024Updated last year
- Compacted and colored de Bruijn graph construction and querying☆98Jul 1, 2026Updated 3 weeks ago
- Differential k-mer analysis☆42Jan 29, 2024Updated 2 years ago
- Genome Pair Rapid Dotter☆70Sep 2, 2021Updated 4 years ago
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- ☆10Jun 9, 2020Updated 6 years ago
- ☆50Jul 2, 2026Updated 3 weeks ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆115Jun 6, 2021Updated 5 years ago
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Apr 9, 2026Updated 3 months ago
- ☆46Apr 18, 2026Updated 3 months ago
- Optimal sequence-to-graph alignment with recombinations☆41Apr 28, 2026Updated 2 months ago