☆63Sep 15, 2025Updated 9 months ago
Alternatives and similar repositories for MBG
Users that are interested in MBG are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- recompute GFA link overlaps☆26Sep 14, 2022Updated 3 years ago
- Long read aligner for cyclic and acyclic pangenome graphs☆41Dec 20, 2023Updated 2 years ago
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- a Bioinformatics Application for Navigating De novo Assembly Graphs Easily☆165Jun 5, 2026Updated 3 weeks ago
- ☆11Dec 9, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Extracts subgraphs or components from a graph in GFA format☆24Nov 18, 2024Updated last year
- Genome Assembly Validation via Inter-SUNK distances in ONT reads☆16Feb 20, 2023Updated 3 years ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆75Feb 19, 2019Updated 7 years ago
- ☆44Dec 29, 2025Updated 6 months ago
- Extracting paths from assembly graphs☆24Jun 22, 2026Updated last week
- ☆11Mar 4, 2025Updated last year
- ☆289Dec 29, 2025Updated 6 months ago
- ☆31Mar 27, 2024Updated 2 years ago
- the pangenome graph evaluator☆29Apr 12, 2021Updated 5 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆12Oct 13, 2021Updated 4 years ago
- alignment to variation graph inducer☆161Jun 17, 2026Updated 2 weeks ago
- A plant organellar Graphical Fragment Assembly toolkit☆16Sep 10, 2025Updated 9 months ago
- Tools for manipulating sequence graphs in the GFA and rGFA formats☆252Dec 16, 2025Updated 6 months ago
- Index and query k-mer matrices in BGZF☆12Apr 30, 2018Updated 8 years ago
- CPANG19 - Computational PANGenomics (2019)☆12May 7, 2020Updated 6 years ago
- Telomere-to-telomere assembly of accurate long reads (PacBio HiFi, Oxford Nanopore Duplex, HERRO corrected Oxford Nanopore Simplex) and O…☆401Apr 22, 2026Updated 2 months ago
- GFA visualizer, GPU-accelerated using Vulkan☆77Aug 2, 2022Updated 3 years ago
- Improved Phased Assembler☆28Mar 11, 2022Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Peregrine: Fast Genome Assembler Using SHIMMER Index☆102Feb 6, 2022Updated 4 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40May 4, 2026Updated last month
- An accurate aligner of long reads to a variation graph, based on co-linear chaining☆35May 23, 2025Updated last year
- Multiple sequence alignment of long tandem repeats☆29Jun 23, 2026Updated last week
- Yet Another Chimeric Read Detector☆86Nov 7, 2024Updated last year
- Genome Pair Rapid Dotter☆69Sep 2, 2021Updated 4 years ago
- Differential k-mer analysis☆42Jan 29, 2024Updated 2 years ago
- ☆10Jun 9, 2020Updated 6 years ago
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- ☆49May 12, 2026Updated last month
- PanPA is a tool for building panproteome graphs and aligning sequences back to the graphs.☆19Apr 9, 2026Updated 2 months ago
- Compacted and colored de Bruijn graph construction and querying☆98Jun 11, 2026Updated 3 weeks ago
- ☆46Apr 18, 2026Updated 2 months ago
- Reference-based variant calling pipeline for a pair of phased haplotype assemblies☆113Jun 6, 2021Updated 5 years ago
- BLEND is a mechanism that can efficiently find fuzzy seed matches between sequences to significantly improve the performance and accuracy…☆47May 10, 2023Updated 3 years ago