Alternatives and similar repositories for MBG:

Users that are interested in MBG are comparing it to the libraries listed below

• pangenome / smoothxg
  linearize and simplify variation graphs using blocked partial order alignment
  ☆57Updated last month
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆54Updated 2 years ago
• lemene / PECAT
  PECAT, a phased error correct and assembly tool
  ☆50Updated 3 months ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆76Updated 2 months ago
• bcgsc / LongStitch
  Correct and scaffold assemblies using long reads
  ☆51Updated last year
• ndierckx / Sim-it
  Versatile simulator for structural variance and Nanopore/PacBio sequencing reads
  ☆25Updated last year
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆100Updated 6 months ago
• VGP / vgp-tools
  ☆28Updated last year
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆33Updated 4 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated 2 weeks ago
• HudsonAlpha / fmlrc2
  ☆46Updated 2 years ago
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• bcgsc / ntEdit
  ✏️ Genome assembly polishing & SNV detection
  ☆68Updated last month
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆66Updated 2 years ago
• bcgsc / ntJoin
  🔗Genome assembly scaffolder using minimizer graphs
  ☆83Updated 6 months ago
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 3 weeks ago
• KolmogorovLab / Wakhan
  Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data
  ☆45Updated last week
• wdecoster / kyber
  ☆21Updated 3 months ago
• ggonnella / gfaviz
  Graphical interactive tool for the visualization of sequence graphs in GFA format.
  ☆68Updated 6 years ago
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆79Updated this week
• AndreaGuarracino / paf2chain
  convert PAF format to CHAIN format
  ☆28Updated 3 months ago
• PacificBiosciences / sawfish
  Structural variant discovery and genotyping from mapped PacBio HiFi data
  ☆43Updated last month
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆37Updated last year
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆107Updated 2 years ago
• GeneDx / pgr-tk
  PGR-TK: Pangenome Research Tool Kit
  ☆98Updated 11 months ago
• kensung-lab / hypo
  HyPo: Super Fast & Accurate Polisher for Long Read Genome Assemblies
  ☆63Updated 5 years ago
• natir / yacrd
  Yet Another Chimeric Read Detector
  ☆78Updated 5 months ago
• bluenote-1577 / flopp
  flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.
  ☆37Updated last year
• mobinasri / flagger
  Evaluating genome assemblies
  ☆88Updated last month
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆45Updated last month