Alternatives and similar repositories for MBG:

Users that are interested in MBG are comparing it to the libraries listed below

• pangenome / smoothxg
  linearize and simplify variation graphs using blocked partial order alignment
  ☆58Updated 2 weeks ago
• ggonnella / gfaviz
  Graphical interactive tool for the visualization of sequence graphs in GFA format.
  ☆67Updated 6 years ago
• ndierckx / Sim-it
  Versatile simulator for structural variance and Nanopore/PacBio sequencing reads
  ☆24Updated last year
• ekg / edyeet
  base-accurate DNA sequence alignments using edlib and mashmap2
  ☆33Updated 4 years ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆54Updated 2 years ago
• marschall-lab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated last week
• DecodeGenetics / Ratatosk
  Hybrid error correction of long reads using colored de Bruijn graphs
  ☆100Updated 5 months ago
• VGP / vgp-tools
  ☆28Updated last year
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆76Updated last month
• bcgsc / ntEdit
  ✏️ Genome assembly polishing & SNV detection
  ☆66Updated last week
• bcgsc / LongStitch
  Correct and scaffold assemblies using long reads
  ☆49Updated last year
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆36Updated last year
• lemene / PECAT
  PECAT, a phased error correct and assembly tool
  ☆49Updated last month
• eldariont / svim-asm
  Structural Variant Identification Method using Genome Assemblies
  ☆100Updated 2 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆35Updated 2 months ago
• PacificBiosciences / sawfish
  Structural variant discovery and genotyping from mapped PacBio HiFi data
  ☆40Updated last week
• ablab / VerityMap
  ☆34Updated 2 years ago
• maickrau / ribotin
  ☆32Updated this week
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆46Updated 4 years ago
• jermp / fulgor
  Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆49Updated this week
• bacpop / ska.rust
  Split k-mer analysis – version 2
  ☆75Updated 3 weeks ago
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆71Updated this week
• ggonnella / gfapy
  Gfapy: a flexible and extensible software library for handling sequence graphs in Python
  ☆66Updated 4 months ago
• fawaz-dabbaghieh / bubble_gun
  ☆41Updated 3 weeks ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆38Updated 2 months ago
• bioinfologics / satsuma2
  FFT cross-correlation based synteny aligner, (re)designed to make full use of parallel computing
  ☆41Updated 3 years ago
• shilpagarg / WHdenovo
  ☆47Updated 4 years ago
• davidebolo1993 / VISOR
  VarIant SimulatOR for short, long and linked reads
  ☆45Updated 4 months ago
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆37Updated 4 months ago
• lh3 / srf
  SRF: Satellite Repeat Finder
  ☆91Updated last year