maickrau / MBGLinks
☆62Updated 2 months ago
Alternatives and similar repositories for MBG
Users that are interested in MBG are comparing it to the libraries listed below
Sorting:
- linearize and simplify variation graphs using blocked partial order alignment☆59Updated 4 months ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆71Updated 6 years ago
- Statistics and analysis for variation graphs☆47Updated 11 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 6 months ago
- Tool for assessing/improving assembly quality in extra-long tandem repeats☆47Updated 4 years ago
- implicit pangenome graph☆84Updated last week
- Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes☆42Updated last year
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- Genome Pair Rapid Dotter☆66Updated 4 years ago
- Efficient low-divergence mapping of long reads in minimizer space☆69Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆50Updated 3 weeks ago
- Versatile simulator for structural variance and Nanopore/PacBio sequencing reads☆27Updated 3 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆50Updated last year
- ☆28Updated last year
- Mumemto: multi-MUM and MEM finding across pangenomes☆124Updated last month
- Detecting multi-genome synteny using minimizer graph mapping☆92Updated 2 weeks ago
- ☆39Updated 2 years ago
- Python wrapper for wavefront alignment using WFA2-lib☆37Updated last year
- ✏️ Genome assembly polishing & SNV detection☆71Updated 2 months ago
- Identification of transposable element families from pangenome polymorphisms☆53Updated 6 months ago
- ☆37Updated 4 months ago
- Differential k-mer analysis☆39Updated last year
- convert PAF format to CHAIN format☆33Updated 7 months ago
- GFA visualizer, GPU-accelerated using Vulkan☆74Updated 3 years ago
- Fast and exact gap-affine partial order alignment☆57Updated last month
- Extracting paths from assembly graphs☆24Updated last year
- ☆31Updated 7 months ago
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- VACmap: a long-read aligner specifically designed for complex structural variation discovery☆37Updated this week
- flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.☆37Updated 2 years ago