Alternatives and similar repositories for MBG

Users that are interested in MBG are comparing it to the libraries listed below

• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆55Updated 3 years ago
• pangenome / smoothxg
  linearize and simplify variation graphs using blocked partial order alignment
  ☆59Updated 4 months ago
• ggonnella / gfaviz
  Graphical interactive tool for the visualization of sequence graphs in GFA format.
  ☆71Updated 6 years ago
• dnbaker / dashing2
  Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
  ☆68Updated last year
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆46Updated 11 months ago
• codialab / GFAffix
  GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.
  ☆36Updated 5 months ago
• bcgsc / ntSynt
  Detecting multi-genome synteny using minimizer graph mapping
  ☆88Updated 3 weeks ago
• bcgsc / ntEdit
  ✏️ Genome assembly polishing & SNV detection
  ☆71Updated last month
• pangenome / PanSN-spec
  Pangenome Sequence Naming: a backwards-compatible hack to simplify the identification of samples and haplotypes in pangenomes
  ☆40Updated last year
• ablab / TandemTools
  Tool for assessing/improving assembly quality in extra-long tandem repeats
  ☆47Updated 4 years ago
• univieCUBE / gepard
  Genome Pair Rapid Dotter
  ☆66Updated 4 years ago
• ndierckx / Sim-it
  Versatile simulator for structural variance and Nanopore/PacBio sequencing reads
  ☆27Updated 3 months ago
• ekimb / mapquik
  Efficient low-divergence mapping of long reads in minimizer space
  ☆68Updated 2 years ago
• pangenome / impg
  implicit pangenome graph
  ☆79Updated last week
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆121Updated last week
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆50Updated last week
• mrvollger / SafFire
  ☆31Updated 6 months ago
• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated last year
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆50Updated 3 years ago
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆54Updated last year
• ksahlin / strobemers
  A repository for generating strobemers and evalaution
  ☆79Updated last year
• piosierra / pantera
  Identification of transposable element families from pangenome polymorphisms
  ☆53Updated 5 months ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆47Updated 4 years ago
• arangrhie / merfin
  Evaluate variant calls and its combination with k-mer multiplicity
  ☆67Updated 2 years ago
• ablab / VerityMap
  ☆38Updated 2 years ago
• maickrau / ribotin
  ☆36Updated 3 months ago
• kjenike / panagram
  ☆67Updated 3 weeks ago
• seryrzu / unialigner
  ☆66Updated last year
• tlemane / kmdiff
  Differential k-mer analysis
  ☆37Updated last year
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated last week