vgteam / libbdsgLinks
Optimized sequence graph implementations for graph genomics
☆34Updated this week
Alternatives and similar repositories for libbdsg
Users that are interested in libbdsg are comparing it to the libraries listed below
Sorting:
- GFA insert into GenomicSQLite☆49Updated 4 years ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 5 months ago
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Updated 4 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆54Updated 3 years ago
- extract MSAs from genome variation graphs☆33Updated 5 years ago
- ☆35Updated 5 years ago
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Lift-over alignments from variant-aware references☆34Updated 2 years ago
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆46Updated last month
- de Bruijn Graph-based read aligner☆34Updated 7 years ago
- VNTR annotation using motif selection☆38Updated last month
- Parallel Sequence to Graph Alignment☆36Updated 2 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆59Updated 3 months ago
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- ☆21Updated 5 years ago
- Method to optimally select samples for validation and resequencing☆28Updated 4 years ago
- General purpose utility related to GAF files☆29Updated last month
- Long read aligner for cyclic and acyclic pangenome graphs☆39Updated last year
- A lightweight library for working with PAF (Pairwise mApping Format) files☆30Updated 3 years ago
- ☆28Updated 6 months ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆70Updated 6 years ago
- ☆35Updated 8 months ago
- Lightweight mosaic/somatic SV caller for long reads (WIP)☆29Updated this week
- Long-read aligner to pangenome graphs☆27Updated last year
- Library for the Handle Graph abstraction☆24Updated this week
- genome variation graphs constructed from HLA GRCh38 ALTs☆23Updated 3 years ago
- ☆46Updated 5 years ago
- Tool for decomposition centromeric assemblies and long reads into monomers☆35Updated 3 years ago
- Targeted genotyper for complex polymorphic genes☆28Updated 2 weeks ago