Optimized sequence graph implementations for graph genomics
☆37Jun 30, 2026Updated 2 weeks ago
Alternatives and similar repositories for libbdsg
Users that are interested in libbdsg are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Library for the Handle Graph abstraction☆25Jan 15, 2026Updated 6 months ago
- alignment to variation graph inducer☆163Jun 17, 2026Updated last month
- Population genetics analysis on VG☆17Apr 22, 2021Updated 5 years ago
- GBWT-based handle graph☆35Jun 17, 2026Updated last month
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆40May 4, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated last month
- Pangenome graphs (review article on graph-based pangenomic methods)☆73Apr 15, 2020Updated 6 years ago
- Assembled Genomes Compressor☆186Jul 13, 2026Updated last week
- GFA insert into GenomicSQLite☆49Jun 7, 2021Updated 5 years ago
- General purpose utility related to GAF files☆31May 20, 2026Updated 2 months ago
- GFA visualizer, GPU-accelerated using Vulkan☆78Aug 2, 2022Updated 3 years ago
- ☆102Apr 22, 2024Updated 2 years ago
- ☆29Sep 28, 2024Updated last year
- For bluntifying overlapped GFAs☆13Jul 26, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆15Jun 29, 2021Updated 5 years ago
- extract MSAs from genome variation graphs☆34Mar 24, 2026Updated 3 months ago
- Fast and compact locality-preserving minimal perfect hashing for k-mer sets.☆44Nov 18, 2023Updated 2 years ago
- memory mapped multimap, multiset, and implicit interval tree based on an in-place parallel sort☆28Jan 25, 2021Updated 5 years ago
- ☆46Apr 18, 2026Updated 3 months ago
- A k-mer search engine for all Sequence Read Archive public accessions☆44May 13, 2026Updated 2 months ago
- PanGenome Graph Building with the first 100 assemblies from the 1000G ONT Sequencing Consortium☆14Apr 5, 2025Updated last year
- Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs☆246Updated this week
- your friendly pangenome graph genotyper☆10Feb 6, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆46Jun 21, 2020Updated 6 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆56May 17, 2022Updated 4 years ago
- ☆26Jul 1, 2026Updated 2 weeks ago
- LongcallD: joint calling and phasing of small, structural and mosaic variants from long reads☆107Jun 25, 2026Updated 3 weeks ago
- convert variation graph alignments to coverage maps over nodes☆27Jan 21, 2026Updated 6 months ago
- Hidden Markov Model based Copy number caller☆20Updated this week
- WFA-lib: Wavefront alignment algorithm library v2☆223Updated this week
- The PanGenome Graph Builder☆17Jul 17, 2024Updated 2 years ago
- GFA parser in Rust☆30May 26, 2023Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- abPOA: an SIMD-based C library for fast partial order alignment using adaptive band☆142Jun 26, 2026Updated 3 weeks ago
- A program to generate a graph which presents a simplified representation of several full length genomes☆13Aug 23, 2018Updated 7 years ago
- ☆31Mar 27, 2024Updated 2 years ago
- base-accurate DNA sequence alignments using edlib and mashmap2☆32Feb 15, 2021Updated 5 years ago
- ☆21Nov 1, 2019Updated 6 years ago
- ☆134Oct 18, 2023Updated 2 years ago
- linearize and simplify variation graphs using blocked partial order alignment☆63Mar 31, 2026Updated 3 months ago