Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http://bit.ly/cheap-proteins
☆151Apr 16, 2025Updated 11 months ago
Alternatives and similar repositories for cheap-proteins
Users that are interested in cheap-proteins are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆121May 27, 2025Updated 10 months ago
- Fast protein backbone generation with SE(3) flow matching.☆319Jul 19, 2024Updated last year
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆190Jun 24, 2024Updated last year
- The Family of Diffusion Protein Language Models (DPLM)☆317Jul 25, 2025Updated 8 months ago
- Diffusion-based all-atom protein generative model.☆233Aug 27, 2025Updated 7 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Aligning protein generative models with experimental fitness☆120Mar 12, 2026Updated 2 weeks ago
- ☆33Oct 14, 2024Updated last year
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆44Aug 5, 2025Updated 7 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated last month
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆86May 16, 2025Updated 10 months ago
- ☆26May 19, 2024Updated last year
- ☆221Mar 2, 2024Updated 2 years ago
- ☆135Jun 3, 2025Updated 9 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆137Nov 11, 2025Updated 4 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Implementation for SE(3) diffusion model with application to protein backbone generation☆415Jul 3, 2023Updated 2 years ago
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆124Jan 16, 2026Updated 2 months ago
- ☆40Sep 17, 2024Updated last year
- Learning the language of protein-protein interactions☆139Jan 12, 2026Updated 2 months ago
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆278Dec 10, 2024Updated last year
- ☆20Oct 3, 2024Updated last year
- ☆123Feb 20, 2026Updated last month
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆267Apr 27, 2025Updated 11 months ago
- Fast protein structure searching or your money back☆118Mar 17, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆518Oct 21, 2025Updated 5 months ago
- ☆256Jul 31, 2024Updated last year
- Official repository for the ProteinGym benchmarks☆402Jan 12, 2026Updated 2 months ago
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆1,724Mar 20, 2026Updated last week
- ☆74Feb 13, 2026Updated last month
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆47Dec 3, 2024Updated last year
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆248Jul 24, 2025Updated 8 months ago
- Efficient manipulation of protein structures in Python☆65Sep 27, 2025Updated 6 months ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆330Oct 28, 2024Updated last year
- ☆12Nov 22, 2024Updated last year
- Efficient implementatin of ESM family.☆81Sep 9, 2025Updated 6 months ago
- Adapting protein language models for structure-conditioned design☆40Aug 5, 2024Updated last year
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆664Jan 15, 2026Updated 2 months ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆166Jul 30, 2025Updated 7 months ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆124Feb 7, 2026Updated last month