Alternatives and similar repositories for Pallatom

Users that are interested in Pallatom are comparing it to the libraries listed below

• yehlincho / BoltzDesign1
  ☆152Updated 2 weeks ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆107Updated 3 months ago
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆78Updated last year
• zhanghaicang / carbonmatrix_public
  ☆115Updated 2 weeks ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆92Updated 6 months ago
• jproney / AF2Rank
  ☆108Updated 2 years ago
• Kuhlman-Lab / evopro
  ☆81Updated last week
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆174Updated 4 months ago
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆55Updated 3 weeks ago
• ikalvet / heme_binder_diffusion
  ☆130Updated 8 months ago
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆51Updated 6 months ago
• bytedance / Protenix-Dock
  An accurate and trainable end-to-end protein-ligand docking framework
  ☆94Updated 3 months ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆126Updated 3 weeks ago
• TencentAI4S / IgGM
  [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design
  ☆73Updated last month
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆62Updated 4 months ago
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆73Updated 5 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• wengong-jin / DSMBind
  ☆90Updated 8 months ago
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆62Updated last month
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆94Updated last week
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆56Updated last month
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆42Updated 6 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• ELELAB / RosettaDDGPrediction
  ☆66Updated 4 months ago
• liuyf020419 / SCUBA-D
  ☆60Updated last year
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆78Updated 2 weeks ago
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆96Updated 10 months ago
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆56Updated 6 months ago
• ai4protein / Pro-Prime
  ☆63Updated last month
• baker-laboratory / CA_RFDiffusion
  ☆44Updated 3 weeks ago