Alternatives and similar repositories for Pallatom:

Users that are interested in Pallatom are comparing it to the libraries listed below

• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆91Updated last month
• zhanghaicang / carbonmatrix_public
  ☆111Updated last month
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆74Updated 10 months ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆112Updated 3 weeks ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆86Updated 4 months ago
• wengong-jin / DSMBind
  ☆87Updated 6 months ago
• jproney / AF2Rank
  ☆101Updated 2 years ago
• Kuhlman-Lab / evopro
  ☆76Updated last month
• ikalvet / heme_binder_diffusion
  ☆122Updated 6 months ago
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆54Updated 2 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆58Updated last year
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆68Updated 5 months ago
• bytedance / Protenix-Dock
  An accurate and trainable end-to-end protein-ligand docking framework
  ☆81Updated 3 weeks ago
• alexechu / protpardelle
  ☆65Updated last year
• TencentAI4S / IgGM
  [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design
  ☆63Updated last month
• pinder-org / pinder
  PINDER: The Protein INteraction Dataset and Evaluation Resource
  ☆113Updated 5 months ago
• ai4protein / Pro-FSFP
  Pro-FSFP: Few-Shot Protein Fitness Prediction
  ☆80Updated 3 months ago
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆47Updated 4 months ago
• Wublab / Pythia
  Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations
  ☆56Updated 2 months ago
• liuyf020419 / SCUBA-D
  ☆59Updated last year
• bcov77 / silent_tools
  A bunch of shell utilities for dealing the silent files
  ☆58Updated last month
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆162Updated 2 months ago
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆62Updated last year
• YuzheWangPKU / DiffPepBuilder
  Official repository for Target-Specific De Novo Peptide Binder Design with DiffPepBuilder
  ☆84Updated this week
• ELELAB / RosettaDDGPrediction
  ☆64Updated 2 months ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆111Updated last month
• wengong-jin / abdockgen
  ☆106Updated 2 years ago
• data2code / afpdb
  Efficient manipulation of protein structures in Python
  ☆53Updated 5 months ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• piercelab / antibody_benchmark
  Antibody-Antigen Docking and Affinity Benchmark
  ☆71Updated 4 years ago