Profluent-E1 family of Protein Encoder Models
☆111Mar 11, 2026Updated last month
Alternatives and similar repositories for E1
Users that are interested in E1 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆39Mar 30, 2025Updated last year
- Fast indexing and search of discontinuous motifs in protein structures☆138Apr 23, 2026Updated last week
- ☆33Mar 2, 2026Updated last month
- One protein is all you need (ICLR 2026)☆105Apr 22, 2026Updated last week
- It's a package for evaluation of predicted poses, right?☆76Mar 27, 2026Updated last month
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- This repo contains the results data for Round 2 of EGFR Protein Design Competition.☆19Mar 18, 2025Updated last year
- A generalized computational framework for biomolecular modeling.☆415Apr 22, 2026Updated last week
- A conditionally adapted protein language model for the generation of enzymes☆23Nov 26, 2024Updated last year
- composite-objective protein design☆299Apr 21, 2026Updated last week
- Inference code for RFdiffusion2☆416Apr 3, 2026Updated 3 weeks ago
- Disordered protein ensemble prediction☆14Apr 2, 2026Updated 3 weeks ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆96Apr 24, 2024Updated 2 years ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆228Jan 3, 2026Updated 3 months ago
- ☆127Apr 4, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆89Jun 23, 2024Updated last year
- ☆36Nov 23, 2025Updated 5 months ago
- Simple Python package to calculate ROC AUC with confidence intervals using DeLong’s method☆23Mar 9, 2026Updated last month
- ☆128Feb 20, 2026Updated 2 months ago
- ☆31Oct 7, 2025Updated 6 months ago
- ☆16Dec 10, 2024Updated last year
- Generative Language Modeling for Antibody Design☆188Oct 5, 2024Updated last year
- Learning the language of protein-protein interactions☆145Apr 14, 2026Updated 2 weeks ago
- Simple python interface for the OpenProtein.AI REST API.☆15Mar 19, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- ☆26Apr 26, 2023Updated 3 years ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆123May 27, 2025Updated 11 months ago
- Embedding-based annotation transfer (EAT) uses Euclidean distance between vector representations (embeddings) of proteins to transfer ann…☆41Aug 29, 2025Updated 8 months ago
- ☆23Nov 28, 2025Updated 5 months ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆131Updated this week
- Fast protein backbone generation with SE(3) flow matching.☆324Jul 19, 2024Updated last year
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆167Mar 28, 2026Updated last month
- GPU-accelerated protein-ligand docking with automated pocket detection, exploring through multi-pocket conditioning. Official Implementa…☆71Nov 22, 2025Updated 5 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Protein stability prediction using rewired protein generative models☆74Dec 25, 2025Updated 4 months ago
- Tokenizing Loops of Antibodies☆34Nov 23, 2025Updated 5 months ago
- [ICML 24] Robust Optimization in Protein Fitness Landscapes Using Reinforcement Learning in Latent Space☆16Aug 9, 2024Updated last year
- mBER - Manifold Binder Engineering and Refinement. mBER enables antibody binder design by leveraging structure templates and sequence con…☆121Jan 9, 2026Updated 3 months ago
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆242Nov 5, 2025Updated 5 months ago
- Origin-1: a generative AI platform for de novo antibody design against novel epitopes☆54Jan 15, 2026Updated 3 months ago
- Public Release of ProGen3 family of Models☆107Jul 21, 2025Updated 9 months ago