Alternatives and similar repositories for ProSST

Users that are interested in ProSST are comparing it to the libraries listed below

• ai4protein / VenusFSFP
  VenusFSFP: Few-Shot Protein Fitness Prediction
  ☆98Updated 2 months ago
• zhanghaicang / carbonmatrix_public
  ☆116Updated 4 months ago
• TencentAI4S / tfold
  open source code for Tencent tFold
  ☆115Updated 7 months ago
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆148Updated last week
• westlake-repl / SaprotHub
  Making Protein Language Modeling Accessible to All Biologists
  ☆121Updated this week
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆119Updated 7 months ago
• zaixizhang / PocketGen
  PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets
  ☆200Updated 6 months ago
• ai4protein / VenusFactory
  🏭 Easy data acquisition, benchmark resources, PLM fine-tuning for bio-researchers. (ACL Demo 2025)
  ☆154Updated last week
• DeepGraphLearning / ESM-GearNet
  ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)
  ☆110Updated 2 years ago
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆197Updated 2 months ago
• wenjiegroup / ProMEP
  Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning
  ☆66Updated 2 months ago
• varun-shanker / structural-evolution
  ☆114Updated last year
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆160Updated last month
• BytedProtein / ByProt
  ☆204Updated last year
• yehlincho / BoltzDesign1
  ☆216Updated 2 months ago
• ai4protein / Pro-Prime
  ☆72Updated 2 months ago
• levinthal / Pallatom
  ☆121Updated 4 months ago
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆77Updated 8 months ago
• duolinwang / S-PLM
  S-PLM: Structure-aware Protein Language Model via Contrastive Learning between Sequence and Structure
  ☆68Updated 4 months ago
• ikalvet / heme_binder_diffusion
  ☆139Updated 3 months ago
• ai4protein / VenusREM
  🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)
  ☆109Updated 2 months ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆45Updated 10 months ago
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆146Updated 2 years ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆169Updated last year
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆89Updated last month
• RSchmirler / data-repo_plm-finetune-eval
  Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"
  ☆47Updated last year
• westlake-repl / ProTrek
  ProTrek: illuminating the Protein Universe through Trimodal Protein Language Model
  ☆161Updated last week
• DeepGraphLearning / GearBind
  Pretrainable geometric graph neural network for antibody affinity maturation
  ☆65Updated 7 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆103Updated 2 weeks ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆74Updated last month