KatarinaYuan / StructTokenBenchLinks
A benchmark for comprehensive evaluation on protein structure tokenization methods
☆26Updated last month
Alternatives and similar repositories for StructTokenBench
Users that are interested in StructTokenBench are comparing it to the libraries listed below
Sorting:
- Aligning protein generative models with experimental fitness☆99Updated 2 months ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆78Updated last year
- ☆65Updated last year
- ☆20Updated 8 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆78Updated last year
- Code for humanization of antibody and nanobody☆44Updated 7 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆43Updated 7 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆98Updated last month
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆45Updated 6 months ago
- A benchmark for 3D biomolecular structure prediction models☆59Updated 2 months ago
- ☆38Updated 10 months ago
- ☆91Updated 9 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆40Updated 7 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆39Updated last year
- A standardized protein design benchmark for motif-scaffolding problems☆63Updated 2 months ago
- ☆25Updated 11 months ago
- ☆27Updated 7 months ago
- ☆27Updated 9 months ago
- Structure-conditioned masked language modeling for protein sequence design☆64Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆110Updated 3 weeks ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆26Updated last year
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆56Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated last year
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆73Updated 2 months ago
- Public Release of ProGen3 family of Models☆76Updated 2 months ago
- Implementation of AlphaFold 3 in PyTorch Lightning + Hydra☆34Updated 9 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆33Updated 8 months ago
- Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models☆61Updated 10 months ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆29Updated 7 months ago
- ☆60Updated last year