Alternatives and similar repositories for StructTokenBench

Users that are interested in StructTokenBench are comparing it to the libraries listed below

• A4Bio / FoldToken_open
  ☆22Updated last year
• alexechu / protpardelle
  ☆65Updated 2 years ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆111Updated last month
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆63Updated 2 months ago
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆84Updated last year
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆49Updated 11 months ago
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆39Updated last year
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆46Updated 11 months ago
• 3BioCompBio / AbAgym
  ☆15Updated last month
• luwei0917 / BindingGYM
  ☆34Updated 3 months ago
• lujiarui / Str2Str
  Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
  ☆79Updated last year
• HannesStark / CodonMPNN
  ☆28Updated 11 months ago
• wengong-jin / DSMBind
  ☆95Updated last year
• anton-bushuiev / PPIformer
  Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)
  ☆49Updated last month
• instadeepai / protein-structure-tokenizer
  Official implementation of "Learning the language of protein structures"
  ☆39Updated 4 months ago
• bytedance / apm
  ☆51Updated 5 months ago
• pgmikhael / clipzyme
  Reaction-Conditioned Virtual Screening of Enzymes
  ☆40Updated 5 months ago
• blt2114 / MotifBench
  A standardized protein design benchmark for motif-scaffolding problems
  ☆70Updated 3 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆39Updated last year
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated 2 years ago
• instadeepai / FrameDiPT
  FrameDiPT: an SE(3) diffusion model for protein structure inpainting
  ☆57Updated last year
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆87Updated 5 months ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆126Updated last week
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆57Updated 5 months ago
• LDeng0205 / confidence-bootstrapping
  Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.
  ☆27Updated last year
• luost26 / RDE-PPI
  Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)
  ☆59Updated last year
• WillHua127 / ReactZyme
  Official repository of ReactZyme
  ☆36Updated last year
• zhengkangjie / ESM-AA
  ☆76Updated 9 months ago
• amyxlu / plaid
  All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins
  ☆115Updated 5 months ago