☆33Oct 14, 2024Updated last year
Alternatives and similar repositories for pLMs-interpretability
Users that are interested in pLMs-interpretability are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- Metrics to evaluate distributional coverage of generative models of protein structures.☆21Aug 13, 2025Updated 8 months ago
- ☆40Sep 17, 2024Updated last year
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 5 months ago
- ☆97Apr 16, 2026Updated 2 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆151Apr 16, 2025Updated last year
- ☆52Aug 19, 2024Updated last year
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆126Apr 23, 2026Updated last week
- A tool for protein and protein complex structure prediction.☆29Jun 13, 2025Updated 10 months ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- ☆31Dec 12, 2024Updated last year
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆44Aug 5, 2025Updated 8 months ago
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Jul 5, 2025Updated 9 months ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Oct 16, 2022Updated 3 years ago
- ☆38Dec 21, 2023Updated 2 years ago
- ☆74Feb 13, 2026Updated 2 months ago
- GraphPart, a data partitioning method for ML on biological sequences☆35Oct 26, 2023Updated 2 years ago
- Implementation of the Pairformer model used in AlphaFold 3☆14Apr 13, 2026Updated 2 weeks ago
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆33Jun 9, 2024Updated last year
- ☆47Sep 16, 2024Updated last year
- ☆17Aug 20, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- ☆137Jun 3, 2025Updated 11 months ago
- Results and data from the pilot round of the Protein Engineering Tournament☆30Mar 25, 2025Updated last year
- ☆89Nov 18, 2025Updated 5 months ago
- ☆127Apr 4, 2026Updated 3 weeks ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆123May 27, 2025Updated 11 months ago
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆88Dec 3, 2025Updated 4 months ago
- ☆134Mar 10, 2026Updated last month
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆63Oct 28, 2025Updated 6 months ago
- ☆26Apr 26, 2023Updated 3 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆23Sep 18, 2025Updated 7 months ago
- random colab notebooks for biology☆26Aug 23, 2025Updated 8 months ago
- Public repository of Google Colab notebooks to use with Phenix☆12Mar 19, 2025Updated last year
- reasoning model trained using GRPO towards rosetta REF2015 for protein stability☆101Oct 16, 2025Updated 6 months ago
- ☆128Feb 20, 2026Updated 2 months ago
- Adapting protein language models for structure-conditioned design☆42Aug 5, 2024Updated last year
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆55Dec 9, 2025Updated 4 months ago