☆33Oct 14, 2024Updated last year
Alternatives and similar repositories for pLMs-interpretability
Users that are interested in pLMs-interpretability are comparing it to the libraries listed below
Sorting:
- Finding patch of conserved amino acid sites in 3D structure☆13Apr 13, 2025Updated 10 months ago
- Metrics to evaluate distributional coverage of generative models of protein structures.☆19Aug 13, 2025Updated 6 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆150Apr 16, 2025Updated 10 months ago
- ☆40Sep 17, 2024Updated last year
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 3 months ago
- ☆93Jan 28, 2026Updated last month
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆123Jan 16, 2026Updated last month
- GraphPart, a data partitioning method for ML on biological sequences☆33Oct 26, 2023Updated 2 years ago
- ☆31Dec 12, 2024Updated last year
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Jul 5, 2025Updated 7 months ago
- A tool for protein and protein complex structure prediction.☆29Jun 13, 2025Updated 8 months ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- ☆37Dec 21, 2023Updated 2 years ago
- Results and data from the pilot round of the Protein Engineering Tournament☆30Mar 25, 2025Updated 11 months ago
- Structure-conditioned masked language modeling for protein sequence design☆71Jan 31, 2024Updated 2 years ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆42Aug 5, 2025Updated 6 months ago
- A Unified Approach to Protein Engineering☆41Jul 2, 2024Updated last year
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated last year
- ☆134Jun 3, 2025Updated 9 months ago
- Adapting protein language models for structure-conditioned design☆40Aug 5, 2024Updated last year
- ☆51Aug 19, 2024Updated last year
- Implementation of the Pairformer model used in AlphaFold 3☆14Feb 23, 2026Updated last week
- ☆15Apr 3, 2025Updated 11 months ago
- Virus Protein Structural Analysis Toolkit☆14Sep 9, 2024Updated last year
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Oct 16, 2022Updated 3 years ago
- ☆25Feb 23, 2026Updated last week
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆120May 27, 2025Updated 9 months ago
- ☆21Oct 26, 2024Updated last year
- ☆74Feb 13, 2026Updated 2 weeks ago
- ☆47Sep 16, 2024Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆118Aug 3, 2025Updated 7 months ago
- random colab notebooks for biology☆26Aug 23, 2025Updated 6 months ago
- ☆25Apr 26, 2023Updated 2 years ago
- ☆17Aug 20, 2024Updated last year
- ☆15Sep 29, 2025Updated 5 months ago
- Protein representation and design under a single training scheme☆24Updated this week
- Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.☆26Mar 8, 2025Updated 11 months ago
- ☆122Feb 20, 2026Updated last week
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆82Dec 3, 2025Updated 3 months ago