zzhangzzhang / pLMs-interpretabilityLinks
☆29Updated 10 months ago
Alternatives and similar repositories for pLMs-interpretability
Users that are interested in pLMs-interpretability are comparing it to the libraries listed below
Sorting:
- ☆38Updated 11 months ago
- ☆28Updated 8 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆38Updated 2 months ago
- ☆70Updated 5 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆70Updated 2 months ago
- ☆28Updated last month
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆51Updated 3 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆39Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated last year
- Adapting protein language models for structure-conditioned design☆40Updated last year
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆38Updated 4 years ago
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- Results and data from the pilot round of the Protein Engineering Tournament☆30Updated 5 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆74Updated 2 weeks ago
- ☆36Updated last year
- Aligning protein generative models with experimental fitness☆103Updated 2 weeks ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆33Updated 9 months ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆35Updated last year
- Tool for modelling the CDRs of antibodies☆32Updated 2 years ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆56Updated last year
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆22Updated 2 years ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆31Updated last year
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆30Updated 3 weeks ago
- Efficient implementatin of ESM family.☆67Updated last week
- ☆17Updated 7 months ago
- ☆13Updated last year
- Code for humanization of antibody and nanobody☆49Updated 8 months ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆26Updated last year
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆30Updated 3 weeks ago