☆34Jun 9, 2026Updated 3 weeks ago
Alternatives and similar repositories for pLMs-interpretability
Users that are interested in pLMs-interpretability are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- Metrics to evaluate distributional coverage of generative models of protein structures.☆21Aug 13, 2025Updated 10 months ago
- ☆40Sep 17, 2024Updated last year
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 7 months ago
- ☆98Jun 24, 2026Updated last week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆155Apr 16, 2025Updated last year
- ☆53Aug 19, 2024Updated last year
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆126Apr 23, 2026Updated 2 months ago
- A tool for protein and protein complex structure prediction.☆28Jun 13, 2025Updated last year
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- Code for the DISCO model: General Multimodal Protein Design Enables DNA-Encoding of Chemistry☆203May 13, 2026Updated last month
- ☆31Dec 12, 2024Updated last year
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆45Aug 5, 2025Updated 10 months ago
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated 2 years ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Jul 5, 2025Updated 11 months ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Oct 16, 2022Updated 3 years ago
- ☆38Dec 21, 2023Updated 2 years ago
- ☆74Feb 13, 2026Updated 4 months ago
- GraphPart, a data partitioning method for ML on biological sequences☆35Oct 26, 2023Updated 2 years ago
- Implementation of the Pairformer model used in AlphaFold 3☆14Jun 22, 2026Updated last week
- Exploring the conformational ensembles of protein-protein complexes with transformer-based generative neural networks☆34Jun 9, 2024Updated 2 years ago
- ☆47Sep 16, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆17Aug 20, 2024Updated last year
- ☆142Jun 3, 2025Updated last year
- Results and data from the pilot round of the Protein Engineering Tournament☆30Mar 25, 2025Updated last year
- ☆89Nov 18, 2025Updated 7 months ago
- ☆135May 18, 2026Updated last month
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆127May 27, 2025Updated last year
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆94Updated this week
- ☆135Jun 9, 2026Updated 3 weeks ago
- Protein Sequence Design with Deep Learning and Tooling like Monte Carlo Sampling and Analysis☆62Oct 28, 2025Updated 8 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆26Apr 26, 2023Updated 3 years ago
- ☆23Sep 18, 2025Updated 9 months ago
- random colab notebooks for biology☆26Aug 23, 2025Updated 10 months ago
- Public repository of Google Colab notebooks to use with Phenix☆12Mar 19, 2025Updated last year
- reasoning model trained using GRPO towards rosetta REF2015 for protein stability☆103Oct 16, 2025Updated 8 months ago
- ☆134May 19, 2026Updated last month
- Adapting protein language models for structure-conditioned design☆42Aug 5, 2024Updated last year