zzhangzzhang / pLMs-interpretability
☆26Updated 5 months ago
Alternatives and similar repositories for pLMs-interpretability:
Users that are interested in pLMs-interpretability are comparing it to the libraries listed below
- ☆33Updated 6 months ago
- ☆27Updated 3 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆34Updated 2 weeks ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆18Updated 3 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆43Updated 3 months ago
- ☆36Updated last year
- ☆62Updated last week
- Implementation of Protein Invariant Point Packer (PIPPack)☆33Updated 10 months ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆31Updated last year
- dMaSIF implementation for google colab☆31Updated 2 years ago
- Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning☆21Updated last week
- Metrics for our protein design competitions.☆24Updated 4 months ago
- A benchmark for 3D biomolecular structure prediction models☆56Updated 3 months ago
- Adapting protein language models for structure-conditioned design☆37Updated 7 months ago
- Results and data from the pilot round of the Protein Engineering Tournament☆28Updated 3 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆32Updated 4 months ago
- protein structure generation with sparse all-atom denoising models☆28Updated last month
- Extension of ThermoMPNN for double mutant predictions☆30Updated 2 weeks ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆37Updated 9 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆70Updated 2 months ago
- code for SeqDance, a biophysics-informed protein language model☆23Updated 5 months ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆28Updated 7 months ago
- ☆11Updated 10 months ago
- Aligning protein generative models with experimental fitness☆88Updated 5 months ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆26Updated last year
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei …☆38Updated 4 months ago
- ☆34Updated 2 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆43Updated 2 weeks ago
- ☆26Updated last month
- Generative diverse protein backbones by protein language model☆31Updated 3 months ago