microsoft / protein-frame-flowLinks
Fast protein backbone generation with SE(3) flow matching.
☆267Updated 11 months ago
Alternatives and similar repositories for protein-frame-flow
Users that are interested in protein-frame-flow are comparing it to the libraries listed below
Sorting:
- ☆175Updated last year
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆177Updated 3 weeks ago
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆232Updated 6 months ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆385Updated last year
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆449Updated 5 months ago
- Diffusion-based all-atom protein generative model.☆199Updated 4 months ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆179Updated last year
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆242Updated last month
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆158Updated last year
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆327Updated last year
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆173Updated 2 years ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆207Updated last year
- A list of manuscripts/tools using diffusion on biological enttieis☆97Updated last year
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆123Updated 2 months ago
- Generative modeling of molecular dynamics trajectories☆156Updated 2 months ago
- Protein Ligand INteraction Dataset and Evaluation Resource☆229Updated 2 weeks ago
- The Family of Diffusion Protein Language Models (DPLM)☆194Updated 3 weeks ago
- Protein Design with Guided Discrete Diffusion☆131Updated last year
- DiffLinker: Equivariant 3D-Conditional Diffusion Model for Molecular Linker Design☆335Updated last year
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆99Updated 10 months ago
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆160Updated 2 years ago
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆282Updated 2 years ago
- ☆192Updated 9 months ago
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆125Updated 7 months ago
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆291Updated last year
- Official repository for the ProteinGym benchmarks☆321Updated last week
- Protein-ligand structure prediction☆217Updated 10 months ago
- Plausibility checks for generated molecule poses.☆289Updated 3 weeks ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆157Updated last year
- A geometry-complete diffusion generative model (GCDM) for 3D molecule generation and optimization. (Nature CommsChem)☆206Updated 3 weeks ago