microsoft / protein-frame-flow
Fast protein backbone generation with SE(3) flow matching.
☆258Updated 9 months ago
Alternatives and similar repositories for protein-frame-flow:
Users that are interested in protein-frame-flow are comparing it to the libraries listed below
- ☆154Updated last year
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆152Updated last month
- Implementation for SE(3) diffusion model with application to protein backbone generation☆365Updated last year
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆220Updated 4 months ago
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆434Updated 3 months ago
- Diffusion-based all-atom protein generative model.☆190Updated 2 months ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆177Updated last year
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆316Updated last year
- Generative modeling of molecular dynamics trajectories☆150Updated 2 weeks ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆232Updated last month
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆151Updated 10 months ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆204Updated last year
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆171Updated 2 years ago
- A list of manuscripts/tools using diffusion on biological enttieis☆96Updated last year
- Implementation of Chroma, generative models of protein using DDPM and GNNs, in Pytorch☆158Updated 2 years ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆115Updated last week
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆96Updated 8 months ago
- Official Implemetation of DPLM (ICML'24) - Diffusion Language Models Are Versatile Protein Learners☆153Updated last week
- Protein Ligand INteraction Dataset and Evaluation Resource☆218Updated 2 weeks ago
- DiffLinker: Equivariant 3D-Conditional Diffusion Model for Molecular Linker Design☆332Updated last year
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆273Updated 2 years ago
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆121Updated 2 years ago
- Plausibility checks for generated molecule poses.☆275Updated last week
- Protein Design with Guided Discrete Diffusion☆127Updated last year
- Pocket2Mol: Efficient Molecular Sampling Based on 3D Protein Pockets☆295Updated last year
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆114Updated 5 months ago
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆289Updated last year
- List of computational protein design research labs☆167Updated 2 months ago
- Protein-ligand structure prediction☆214Updated 8 months ago
- ☆183Updated 7 months ago