a-r-j / ProteinWorkshopLinks
Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models and training/task utilities. (ICLR 2024)
☆250Updated 3 months ago
Alternatives and similar repositories for ProteinWorkshop
Users that are interested in ProteinWorkshop are comparing it to the libraries listed below
Sorting:
- ☆198Updated 10 months ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆338Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆210Updated 5 months ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆212Updated last year
- PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets☆193Updated 3 months ago
- ☆214Updated 2 years ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆131Updated 3 months ago
- Protein structure datasets for machine learning.☆111Updated 3 months ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆193Updated last week
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆288Updated 2 years ago
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆131Updated 8 months ago
- Official repository for the ProteinGym benchmarks☆337Updated 2 weeks ago
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆298Updated last month
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆102Updated 10 months ago
- ☆212Updated 10 months ago
- Masif seed paper repository☆156Updated 2 years ago
- ☆129Updated 2 years ago
- Generative Language Modeling for Antibody Design☆159Updated 10 months ago
- Dataset and package for working with protein-protein interactions in 3D☆94Updated 3 months ago
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆109Updated last year
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆116Updated 4 months ago
- EquiDock: geometric deep learning for fast rigid 3D protein-protein docking☆244Updated last year
- Protein Ligand INteraction Dataset and Evaluation Resource☆238Updated last month
- List of computational protein design research labs☆185Updated 5 months ago
- Protein-ligand structure prediction☆222Updated this week
- ALL Molecular ML papers from ICLR'25.☆38Updated 4 months ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆181Updated last year
- Geometric Vector Perceptron --- a rotation-equivariant GNN for learning from biomolecular structure☆148Updated 4 years ago
- A geometry-complete diffusion generative model (GCDM) for 3D molecule generation and optimization. (Nature CommsChem)☆211Updated 2 months ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆316Updated 9 months ago