Alternatives and similar repositories for SaProt:

Users that are interested in SaProt are comparing it to the libraries listed below

• OATML-Markslab / ProteinGym
  Official repository for the ProteinGym benchmarks
  ☆294Updated this week
• dauparas / LigandMPNN
  ☆356Updated 2 months ago
• baker-laboratory / rf_diffusion_all_atom
  Public RFDiffusionAA repo
  ☆387Updated 9 months ago
• nrbennet / dl_binder_design
  ☆303Updated 8 months ago
• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆492Updated 2 weeks ago
• microsoft / protein-sequence-models
  ☆245Updated 8 months ago
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆353Updated last year
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆713Updated 2 weeks ago
• luost26 / diffab
  ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
  ☆317Updated last year
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆310Updated 5 months ago
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆355Updated 10 months ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆256Updated 2 years ago
• Graylab / DL4Proteins-notebooks
  Colab Notebooks covering deep learning tools for biomolecular structure prediction and design
  ☆364Updated 2 weeks ago
• Zuricho / ProteinDesignLabs
  List of computational protein design research labs
  ☆167Updated 2 months ago
• mat10d / EvolvePro
  This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…
  ☆238Updated 3 weeks ago
• ml4bio / RNA-FM
  Nature Methods: RNA foundation model (together with RhoFold)
  ☆259Updated 4 months ago
• RosettaCommons / RFantibody
  ☆180Updated this week
• bjornwallner / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆269Updated 2 months ago
• zrqiao / NeuralPLexer
  NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
  ☆289Updated 11 months ago
• ChatMol / ChatMol
  ChatMol
  ☆221Updated last month
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆233Updated 3 months ago
• biolists / folding_tools
  A collection of *fold* tools
  ☆293Updated 7 months ago
• zaixizhang / PocketGen
  PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets
  ☆176Updated this week
• drorlab / gvp-pytorch
  Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure
  ☆273Updated 2 years ago
• OATML-Markslab / Tranception
  Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"
  ☆151Updated last year
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆162Updated 2 months ago
• DeepGraphLearning / GearNet
  GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)
  ☆284Updated last year
• brianhie / efficient-evolution
  Efficient evolution from protein language models
  ☆198Updated last year
• BytedProtein / ByProt
  ☆182Updated 6 months ago
• adaptyvbio / ProteinFlow
  Versatile computational pipeline for processing protein structure data for deep learning applications.
  ☆254Updated last year