Saprot: Protein Language Model with Structural Alphabet (AA+3Di)
☆585Mar 8, 2026Updated last month
Alternatives and similar repositories for SaProt
Users that are interested in SaProt are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Making Protein Language Modeling Accessible to All Biologists☆159Updated this week
- Official repository for the ProteinGym benchmarks☆413Mar 25, 2026Updated 2 weeks ago
- 🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)☆149May 29, 2025Updated 10 months ago
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,210Mar 10, 2026Updated last month
- ProTrek: illuminating the Protein Universe through Trimodal Protein Language Model☆203Feb 14, 2026Updated last month
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆2,291Mar 19, 2026Updated 3 weeks ago
- ☆214Sep 24, 2024Updated last year
- List of papers about Proteins Design using Deep Learning☆1,914Apr 4, 2026Updated last week
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,025Feb 7, 2024Updated 2 years ago
- Code for the ProteinMPNN paper☆1,694Aug 14, 2024Updated last year
- Bilingual Language Model for Protein Sequence and Structure☆308Mar 6, 2026Updated last month
- Making Protein Design accessible to all via Google Colab!☆901Apr 6, 2026Updated last week
- The Family of Diffusion Protein Language Models (DPLM)☆317Jul 25, 2025Updated 8 months ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆87May 16, 2025Updated 10 months ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆563Feb 6, 2025Updated last year
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆238Mar 26, 2026Updated 2 weeks ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆268Apr 27, 2025Updated 11 months ago
- ☆137Jun 3, 2025Updated 10 months ago
- Public RFDiffusionAA repo☆476Jul 9, 2024Updated last year
- ☆78Feb 11, 2025Updated last year
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 5 months ago
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…☆351Jun 11, 2025Updated 10 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆128Nov 19, 2025Updated 4 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Sidechain conditioning and modeling for full-atom protein sequence design☆138Nov 11, 2025Updated 5 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated last month
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆331Oct 28, 2024Updated last year
- Implementation for SE(3) diffusion model with application to protein backbone generation☆418Jul 3, 2023Updated 2 years ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆127Updated this week
- Official repository of EnzymeFlow☆101Dec 7, 2024Updated last year
- ☆803May 27, 2025Updated 10 months ago
- Code for running RFdiffusion☆2,810Nov 20, 2025Updated 4 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆316Jun 13, 2025Updated 9 months ago
- Diffusion-based all-atom protein generative model.☆233Aug 27, 2025Updated 7 months ago
- The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics☆202Sep 18, 2024Updated last year
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆96Apr 24, 2024Updated last year
- A generative model for programmable protein design☆809Apr 11, 2024Updated 2 years ago
- Chai-1, SOTA model for biomolecular structure prediction☆1,913Updated this week
- Diffusion models of protein structure; trigonometry and attention are all you need!☆566Dec 12, 2023Updated 2 years ago