Alternatives and similar repositories for SaProt:

Users that are interested in SaProt are comparing it to the libraries listed below

• dauparas / LigandMPNN
  ☆295Updated last month
• OATML-Markslab / ProteinGym
  Official repository for the ProteinGym benchmarks
  ☆285Updated last week
• baker-laboratory / rf_diffusion_all_atom
  Public RFDiffusionAA repo
  ☆376Updated 8 months ago
• nrbennet / dl_binder_design
  ☆293Updated 7 months ago
• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆467Updated last week
• mat10d / EvolvePro
  This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…
  ☆217Updated last month
• luost26 / diffab
  ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
  ☆311Updated last year
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆304Updated 4 months ago
• microsoft / protein-sequence-models
  ☆241Updated 7 months ago
• Graylab / DL4Proteins-notebooks
  Colab Notebooks covering deep learning tools for biomolecular structure prediction and design
  ☆347Updated 2 months ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆253Updated last year
• Zuricho / ProteinDesignLabs
  List of computational protein design research labs
  ☆163Updated last month
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆350Updated last year
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆353Updated 9 months ago
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆697Updated this week
• mheinzinger / ProstT5
  Bilingual Language Model for Protein Sequence and Structure
  ☆225Updated 2 months ago
• bjornwallner / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆261Updated 2 months ago
• BytedProtein / ByProt
  ☆178Updated 6 months ago
• ChatMol / ChatMol
  ChatMol
  ☆212Updated last week
• RosettaCommons / RFantibody
  ☆150Updated this week
• zaixizhang / PocketGen
  PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets
  ☆173Updated 2 weeks ago
• uw-ipd / RoseTTAFold2
  ☆190Updated 4 months ago
• westlake-repl / ProTrek
  ProTrek: Navigating the Protein Universe through Tri-Modal Contrastive Learning
  ☆92Updated last week
• bjing2016 / alphaflow
  AlphaFold Meets Flow Matching for Generating Protein Ensembles
  ☆422Updated 2 months ago
• zrqiao / NeuralPLexer
  NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
  ☆282Updated 11 months ago
• westlake-repl / SaprotHub
  Making Protein Modeling Accessible to All Biologists
  ☆102Updated this week
• OATML-Markslab / Tranception
  Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"
  ☆149Updated last year
• ml4bio / RNA-FM
  Nature Methods: RNA foundation model (together with RhoFold)
  ☆251Updated 3 months ago
• SysBioChalmers / DLKcat
  Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic mo…
  ☆150Updated last year
• adaptyvbio / ProteinFlow
  Versatile computational pipeline for processing protein structure data for deep learning applications.
  ☆252Updated last year