uci-cbcl / esm-efficientLinks
Efficient implementatin of ESM family.
☆80Updated 4 months ago
Alternatives and similar repositories for esm-efficient
Users that are interested in esm-efficient are comparing it to the libraries listed below
Sorting:
- ☆128Updated 2 weeks ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆91Updated last year
- Learning the language of protein-protein interactions☆131Updated 3 weeks ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆127Updated 2 months ago
- Aligning protein generative models with experimental fitness☆117Updated 3 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆117Updated 6 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Updated 2 months ago
- ☆76Updated 4 years ago
- Fast indexing and search of discontinuous motifs in protein structures☆113Updated this week
- ☆47Updated last year
- TemStaPro - a program for protein thermostability prediction using sequence representations from a protein language model.☆72Updated last year
- Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.☆86Updated last year
- Local Interaction Score (LIS) Calculation from AlphaFold-Multimer (Enhanced Protein-Protein Interaction Discovery via AlphaFold-Multimer)…☆63Updated 3 months ago
- An open-source deep learning framework for data mining of protein-protein interfaces or single-residue variants.☆56Updated last year
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆114Updated 3 months ago
- PLM based active learning model for protein engineering☆85Updated last year
- AlphaBind code + model accompanying pre-print☆89Updated 6 months ago
- ☆118Updated last month
- Active Learning-Assisted Directed Evolution for Protein Engineering☆78Updated 3 months ago
- ☆41Updated 5 months ago
- A dataset for training and benchmarking deep learning models for RNA structure prediction☆62Updated 3 weeks ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆70Updated 5 months ago
- Code for humanization of antibody and nanobody☆72Updated 5 months ago
- ☆74Updated last year
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆55Updated 9 months ago
- Public repository describing training and testing of AntiBERTa.☆61Updated 2 years ago
- ☆61Updated last year
- MiniFold: Simple, Fast and Accurate Protein Structure Prediction☆82Updated 6 months ago
- Data repository for "Fine-tuning protein language models boosts predictions across diverse tasks"☆55Updated 3 months ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆35Updated 2 months ago