Alternatives and similar repositories for DeepUrfold

Users that are interested in DeepUrfold are comparing it to the libraries listed below

• 3BioCompBio / pyScoMotif
  Python tool for the discovery of similar 3D structural motifs across protein structures.
  ☆34Updated 2 years ago
• bouralab / Prop3D
  A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…
  ☆38Updated last year
• johnnytam100 / AlphaCutter
  This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.
  ☆16Updated 2 years ago
• amyguo1997 / dynamic_protein_design
  Code for deep learning guided design of dynamic proteins
  ☆32Updated last year
• meilerlab / probabilities_design
  ☆15Updated 10 months ago
• matteoferla / pyrosetta-help
  Some scripts that I keep using over and over.
  ☆21Updated 7 months ago
• bwicky / oligomer_hallucination
  ☆37Updated 2 years ago
• Andre-lab / evodock
  A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking
  ☆29Updated 7 months ago
• PDBeurope / protein-cluster-conformers
  Clusters protein chains based on CA distance difference
  ☆16Updated last year
• bwicky / SAPP_DMX
  ☆27Updated 6 months ago
• ProteinDesignLab / protpardelle-1c
  Updated Protpardelle models with more robust motif scaffolding and multichain support
  ☆66Updated last month
• KULL-Centre / _2024_cagiada_stability
  ☆74Updated 10 months ago
• KosinskiLab / alphafold3x
  Explicit crosslinks in AlphaFold 3
  ☆23Updated 10 months ago
• Rocklin-Lab / cdna-display-proteolysis-pipeline
  ☆25Updated 2 years ago
• NRGlab / Surfaces
  ☆15Updated 4 months ago
• lauramarie99 / ProtDesign2
  ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN
  ☆22Updated 11 months ago
• sokrypton / roscon2024
  Tutorial files
  ☆12Updated last year
• LPDI-EPFL / trivalent_cocktail
  ☆11Updated 5 years ago
• strauchlab / iNNterfaceDesign
  ☆20Updated 3 years ago
• psipred / Merizo
  Fast and accurate protein domain segmentation using Invariant Point Attention
  ☆46Updated 8 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆40Updated last year
• luo-group / MODIFY
  ML-optimized library design with improved fitness and diversity for protein engineering
  ☆36Updated 3 months ago
• gitter-lab / metl-pretrained
  Pretrained METL models with minimal dependencies
  ☆16Updated 4 months ago
• vendruscolo-lab / AlphaFold-IDP
  This repository provides with custom code and analysis scripts to generate structural ensembles of intrinsically disordered proteins by u…
  ☆19Updated 3 months ago
• lehner-lab / domainome
  ☆16Updated last year
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆29Updated 2 years ago
• PKUliujl / GeoSeqBuilder
  ☆32Updated last year
• tommyhuangthu / EvoEF2
  Physical energy function for protein sequence design
  ☆36Updated 2 years ago
• sirius777coder / GPDL
  Generative diverse protein backbones by protein language model
  ☆34Updated 3 months ago
• beckham-lab / EpHod
  Machine learning prediction of enzyme optimum pH
  ☆50Updated 9 months ago