Explore protein fold space with deep generative models
☆16Aug 5, 2024Updated last year
Alternatives and similar repositories for DeepUrfold
Users that are interested in DeepUrfold are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆39Jul 25, 2024Updated last year
- ☆74Feb 13, 2026Updated last month
- Graphical Representation of Ancestral Sequence Predictions☆12Mar 6, 2023Updated 3 years ago
- Python tool for the discovery of similar 3D structural motifs across protein structures.☆34Nov 18, 2023Updated 2 years ago
- Python framework for doing ancestral sequence reconstruction☆43Updated this week
- random colab notebooks for biology☆26Aug 23, 2025Updated 7 months ago
- Protein Structure Archiver☆14Sep 10, 2025Updated 6 months ago
- ☆18Feb 25, 2026Updated 3 weeks ago
- ☆15Apr 3, 2025Updated 11 months ago
- ☆16Dec 10, 2024Updated last year
- Rendering protein mutation movies from predicted 3D structures☆20Dec 7, 2023Updated 2 years ago
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- ☆15Mar 28, 2025Updated 11 months ago
- protein backbone refinement☆15Sep 12, 2024Updated last year
- ☆18Oct 30, 2023Updated 2 years ago
- Tokenizing Loops of Antibodies☆25Nov 23, 2025Updated 4 months ago
- Metrics to evaluate distributional coverage of generative models of protein structures.☆20Aug 13, 2025Updated 7 months ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 2 years ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆122Aug 3, 2025Updated 7 months ago
- Neural networks to fit interpretable models and quantify energies, energetic couplings, epistasis, and allostery from deep mutational sca…☆56Apr 10, 2025Updated 11 months ago
- A Memetic Algorithm boosts accuracy and speed of all-atom protein-protein docking☆29Jul 5, 2025Updated 8 months ago
- ☆27Aug 8, 2025Updated 7 months ago
- ☆37Dec 21, 2023Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆72Jan 31, 2024Updated 2 years ago
- ☆19Mar 14, 2026Updated last week
- ☆32Mar 2, 2026Updated 3 weeks ago
- ☆23Jul 14, 2023Updated 2 years ago
- ☆36Jun 17, 2025Updated 9 months ago
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- Fast protein structure searching or your money back☆118Updated this week
- scripts to find PBD structures for cancer driver proteins☆31Feb 27, 2026Updated 3 weeks ago
- A package to create, visualize, and analysis PDB-derived pseudo-ensembles.☆10Jan 7, 2026Updated 2 months ago
- ☆20Oct 9, 2025Updated 5 months ago
- ☆96Updated this week
- A Python package to manage protein design workflows on computing clusters and local machines. Documentation can be found here: https://pr…☆40Updated this week
- Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/con…☆16Oct 27, 2021Updated 4 years ago
- ☆48Sep 25, 2024Updated last year
- A standardized protein design benchmark for motif-scaffolding problems☆76Jan 27, 2026Updated last month
- Structure prediction of alternative protein conformations☆83Feb 24, 2025Updated last year