instadeepai / protein-structure-tokenizerLinks
Official implementation of "Learning the language of protein structures"
☆41Updated 6 months ago
Alternatives and similar repositories for protein-structure-tokenizer
Users that are interested in protein-structure-tokenizer are comparing it to the libraries listed below
Sorting:
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- Aligning protein generative models with experimental fitness☆114Updated 2 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆40Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 7 months ago
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆37Updated 4 months ago
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆78Updated last year
- ☆65Updated 2 years ago
- Official repository of ReactZyme☆37Updated last year
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆122Updated 10 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆83Updated last year
- A standardized protein design benchmark for motif-scaffolding problems☆72Updated last week
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆61Updated last year
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆34Updated 3 weeks ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆47Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆59Updated last year
- ☆76Updated 10 months ago
- ☆23Updated last year
- Public Release of ProGen3 family of Models☆93Updated 5 months ago
- Source code of the paper "Protein Sequence and Structure Co-Design with Equivariant Translation"☆24Updated 2 years ago
- In-silico design pipeline for evaluating protein structure diffusion models.☆28Updated last year
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Updated last year
- ☆51Updated 5 months ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆51Updated 4 months ago
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆37Updated 2 years ago
- Official repository of EnzymeFlow☆97Updated last year
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆114Updated 4 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆90Updated 6 months ago
- ☆121Updated last month