RosettaCommons / atomworksLinks
A generalized computational framework for biomolecular modeling.
☆307Updated last week
Alternatives and similar repositories for atomworks
Users that are interested in atomworks are comparing it to the libraries listed below
Sorting:
- Diffusion-based all-atom protein generative model.☆223Updated 2 months ago
- Central repository for biomolecular foundation models with shared trainers and pipeline components☆180Updated last month
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆142Updated 6 months ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆213Updated 3 months ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆219Updated last year
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆136Updated 11 months ago
- composite-objective protein design☆108Updated last week
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆114Updated 4 months ago
- ☆216Updated 2 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆197Updated 2 months ago
- Comprehensive benchmarking of protein-ligand structure prediction methods. (ICML 2024 AI4Science)☆170Updated 2 months ago
- ☆121Updated 4 months ago
- Plugin for folding sequences directly in PyMOL☆104Updated 2 months ago
- Protein-ligand structure prediction☆229Updated 2 months ago
- Dataset and package for working with protein-protein interactions in 3D☆96Updated 5 months ago
- Protein Ligand INteraction Dataset and Evaluation Resource☆254Updated 4 months ago
- ☆199Updated 6 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆119Updated 7 months ago
- Aligning protein generative models with experimental fitness☆108Updated last week
- Official repository of EnzymeFlow☆94Updated 10 months ago
- Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.☆138Updated last week
- Improved antibody structure-based design using inverse folding☆140Updated 2 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆122Updated 4 months ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆152Updated 2 months ago
- IntelliFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction.☆147Updated 3 months ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆253Updated 5 months ago
- ☆116Updated 3 months ago
- Inference code for RFdiffusion2☆308Updated this week
- A standardized protein design benchmark for motif-scaffolding problems☆68Updated 3 months ago
- ☆113Updated 2 years ago