A generalized computational framework for biomolecular modeling.
☆411Apr 7, 2026Updated this week
Alternatives and similar repositories for atomworks
Users that are interested in atomworks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Central repository for biomolecular foundation models with shared trainers and pipeline components☆769Updated this week
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆250Jul 24, 2025Updated 8 months ago
- Inference code for RFdiffusion2☆411Apr 3, 2026Updated last week
- Sidechain conditioning and modeling for full-atom protein sequence design☆138Nov 11, 2025Updated 5 months ago
- ☆563Feb 6, 2025Updated last year
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- ☆243Feb 12, 2026Updated 2 months ago
- User friendly and accurate binder design pipeline☆1,069Mar 13, 2026Updated 3 weeks ago
- Fast protein backbone generation with SE(3) flow matching.☆322Jul 19, 2024Updated last year
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆1,794Updated this week
- Profluent-E1 family of Protein Encoder Models☆109Mar 11, 2026Updated last month
- Chai-1, SOTA model for biomolecular structure prediction☆1,913Updated this week
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆190Jun 24, 2024Updated last year
- ☆41Jul 28, 2025Updated 8 months ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆418Jul 3, 2023Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆521Mar 22, 2026Updated 3 weeks ago
- Making Protein Design accessible to all via Google Colab!☆901Apr 6, 2026Updated last week
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆331Oct 28, 2024Updated last year
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆120Jan 28, 2026Updated 2 months ago
- ☆803May 27, 2025Updated 10 months ago
- Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning☆785Updated this week
- Diffusion-based all-atom protein generative model.☆233Aug 27, 2025Updated 7 months ago
- The Family of Diffusion Protein Language Models (DPLM)☆317Jul 25, 2025Updated 8 months ago
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆239Nov 5, 2025Updated 5 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- ☆399Aug 7, 2024Updated last year
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆53Jul 22, 2025Updated 8 months ago
- ☆137Jun 3, 2025Updated 10 months ago
- Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"☆47Aug 5, 2025Updated 8 months ago
- Code for the ProteinMPNN paper☆1,694Aug 14, 2024Updated last year
- Fast deep learning methods for large-scale protein-protein interaction screening☆125Aug 3, 2025Updated 8 months ago
- Code for running RFdiffusion☆2,810Nov 20, 2025Updated 4 months ago
- Public RFDiffusionAA repo☆476Jul 9, 2024Updated last year
- ☆2,291Mar 19, 2026Updated 3 weeks ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Official repository for the Boltz biomolecular interaction models☆3,882Mar 29, 2026Updated 2 weeks ago
- Official repository of "ODesign: A World Model for Biomolecular Interaction Design"☆279Feb 2, 2026Updated 2 months ago
- Comprehensive benchmarking of protein-ligand structure prediction methods. (Nature Machine Intelligence)☆219Mar 24, 2026Updated 2 weeks ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆221Jan 3, 2026Updated 3 months ago
- List of papers about Proteins Design using Deep Learning☆1,914Apr 4, 2026Updated last week
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆238Mar 26, 2026Updated 2 weeks ago
- ☆26Aug 25, 2025Updated 7 months ago