A generalized computational framework for biomolecular modeling.
☆405Mar 19, 2026Updated this week
Alternatives and similar repositories for atomworks
Users that are interested in atomworks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Central repository for biomolecular foundation models with shared trainers and pipeline components☆744Updated this week
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆245Jul 24, 2025Updated 7 months ago
- Inference code for RFdiffusion2☆400Nov 11, 2025Updated 4 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆137Nov 11, 2025Updated 4 months ago
- ☆557Feb 6, 2025Updated last year
- ☆242Feb 12, 2026Updated last month
- User friendly and accurate binder design pipeline☆1,048Mar 13, 2026Updated last week
- Fast protein backbone generation with SE(3) flow matching.☆317Jul 19, 2024Updated last year
- Profluent-E1 family of Protein Encoder Models☆105Mar 11, 2026Updated last week
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆1,724Updated this week
- ☆41Jul 28, 2025Updated 7 months ago
- Chai-1, SOTA model for biomolecular structure prediction☆1,906Dec 3, 2025Updated 3 months ago
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆518Oct 21, 2025Updated 5 months ago
- Making Protein Design accessible to all via Google Colab!☆894Mar 10, 2026Updated last week
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆190Jun 24, 2024Updated last year
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆118Jan 28, 2026Updated last month
- Implementation for SE(3) diffusion model with application to protein backbone generation☆415Jul 3, 2023Updated 2 years ago
- Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning☆775Updated this week
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆331Oct 28, 2024Updated last year
- ☆802May 27, 2025Updated 9 months ago
- ☆395Aug 7, 2024Updated last year
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆53Jul 22, 2025Updated 8 months ago
- Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"☆47Aug 5, 2025Updated 7 months ago
- Diffusion-based all-atom protein generative model.☆233Aug 27, 2025Updated 6 months ago
- Fast deep learning methods for large-scale protein-protein interaction screening☆122Aug 3, 2025Updated 7 months ago
- Code for the ProteinMPNN paper☆1,665Aug 14, 2024Updated last year
- Official repository of "ODesign: A World Model for Biomolecular Interaction Design"☆276Feb 2, 2026Updated last month
- Code for running RFdiffusion☆2,784Nov 20, 2025Updated 4 months ago
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆232Nov 5, 2025Updated 4 months ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆214Jan 3, 2026Updated 2 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆232Aug 7, 2025Updated 7 months ago
- Public RFDiffusionAA repo☆472Jul 9, 2024Updated last year
- Official repository for the Boltz biomolecular interaction models☆3,852Updated this week
- ☆135Jun 3, 2025Updated 9 months ago
- ☆26Aug 25, 2025Updated 6 months ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆172Feb 6, 2026Updated last month
- List of papers about Proteins Design using Deep Learning☆1,905Updated this week
- The Family of Diffusion Protein Language Models (DPLM)☆315Jul 25, 2025Updated 7 months ago
- A thin wrapper around ProteinMPNN for convenient sampling without having to write out or consume files☆12Apr 29, 2024Updated last year