A generalized computational framework for biomolecular modeling.
☆437Jul 17, 2026Updated last week
Alternatives and similar repositories for atomworks
Users that are interested in atomworks are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Central repository for biomolecular foundation models with shared trainers and pipeline components☆909Updated this week
- Inference code for RFdiffusion2☆439Apr 3, 2026Updated 3 months ago
- ☆257Feb 12, 2026Updated 5 months ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆82May 1, 2026Updated 2 months ago
- A partially latent flow matching model for the joint generation of a protein’s amino acid sequence and full atomistic structure, includin…☆304Sep 23, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- BoltzGen: Toward Universal Binder Design☆1,011May 28, 2026Updated last month
- ☆144May 18, 2026Updated 2 months ago
- composite-objective protein design☆349Updated this week
- User friendly and accurate binder design pipeline☆1,164May 11, 2026Updated 2 months ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆270Jul 24, 2025Updated last year
- ☆607Feb 6, 2025Updated last year
- A fully open source biomolecular structure prediction model based on AlphaFold3☆795Updated this week
- ☆161Updated this week
- Sidechain conditioning and modeling for full-atom protein sequence design☆144Nov 11, 2025Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆79May 4, 2026Updated 2 months ago
- Official repository of PXDesign☆236Dec 31, 2025Updated 6 months ago
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆2,006May 6, 2026Updated 2 months ago
- Profluent-E1 family of Protein Encoder Models☆113Mar 11, 2026Updated 4 months ago
- Generative model for protein binder design for protein and small molecule targets. Combines a pretrained flow-based generative model (bui…☆396Jul 16, 2026Updated last week
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆254Jan 3, 2026Updated 6 months ago
- Making Protein Design accessible to all via Google Colab!☆924Apr 6, 2026Updated 3 months ago
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆256Nov 5, 2025Updated 8 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆131Jan 28, 2026Updated 5 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Public RFDiffusionAA repo☆483Jul 9, 2024Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆237Aug 27, 2025Updated 10 months ago
- Potts model-based protein sequence design☆107Jul 1, 2026Updated 3 weeks ago
- Official repository for the Boltz biomolecular interaction models☆4,132May 29, 2026Updated last month
- ☆813May 18, 2026Updated 2 months ago
- IntelliFold: A Controllable Foundation Model for General and Specialized Biomolecular Structure Prediction.☆227Jun 23, 2026Updated last month
- Genie 3 is a fast, all-atom SE(3)-equivariant diffusion model for protein design. It achieves state-of-the-art performance on uncondition…☆119May 10, 2026Updated 2 months ago
- Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning☆855Updated this week
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆94Jun 26, 2026Updated 3 weeks ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Fast protein backbone generation with SE(3) flow matching.☆327Jul 19, 2024Updated 2 years ago
- An Open-source Drug Discovery Engine☆364Updated this week
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆536Mar 22, 2026Updated 4 months ago
- It's a package for evaluation of predicted poses, right?☆78Jul 13, 2026Updated last week
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆333Oct 28, 2024Updated last year
- Official repository of "ODesign: A World Model for Biomolecular Interaction Design"☆327Jul 1, 2026Updated 3 weeks ago
- Code for running RFdiffusion☆2,979Jul 15, 2026Updated last week