OATML-Markslab / ProteinGymLinks
Official repository for the ProteinGym benchmarks
☆321Updated last week
Alternatives and similar repositories for ProteinGym
Users that are interested in ProteinGym are comparing it to the libraries listed below
Sorting:
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆311Updated 7 months ago
- ☆247Updated 10 months ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆157Updated last year
- RoseTTAFold2 protein/nucleic acid complex prediction☆359Updated last year
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆260Updated last year
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆327Updated last year
- Efficient evolution from protein language models☆205Updated last year
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆465Updated last week
- ☆194Updated 2 months ago
- Bilingual Language Model for Protein Sequence and Structure☆252Updated 5 months ago
- List of computational protein design research labs☆181Updated 4 months ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆287Updated 5 months ago
- Protein hallucination and inpainting with RoseTTAFold☆260Updated 2 years ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆242Updated last month
- ☆390Updated 4 months ago
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies☆364Updated last year
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…☆266Updated last week
- Public RFDiffusionAA repo☆403Updated 11 months ago
- A machine-learning package for navigating combinatorial protein fitness landscapes.☆125Updated 3 years ago
- ☆224Updated 2 months ago
- ☆321Updated 10 months ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictions☆151Updated last year
- User friendly and accurate binder design pipeline☆564Updated 2 weeks ago
- ☆192Updated 9 months ago
- Diffusion-based all-atom protein generative model.☆199Updated 4 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆174Updated 4 months ago
- Generative Language Modeling for Antibody Design☆151Updated 8 months ago
- BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatio…☆195Updated last month
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆291Updated last year
- A collection of *fold* tools☆293Updated 9 months ago