Official repository for the ProteinGym benchmarks
☆469Mar 25, 2026Updated 5 months ago
Alternatives and similar repositories for ProteinGym
Users that are interested in ProteinGym are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆135Nov 19, 2025Updated 9 months ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆626Mar 8, 2026Updated 5 months ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆143Apr 25, 2026Updated 4 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆106Apr 24, 2024Updated 2 years ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆97Jul 20, 2026Updated last month
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆265Mar 26, 2026Updated 5 months ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆46Aug 5, 2025Updated last year
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆170Aug 24, 2023Updated 3 years ago
- ☆2,935Updated this week
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆140Apr 23, 2026Updated 4 months ago
- Public Release of ProGen3 family of Models☆114Jul 21, 2025Updated last year
- 🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)☆160Jul 20, 2026Updated last month
- List of papers about Proteins Design using Deep Learning☆1,971Aug 15, 2026Updated 2 weeks ago
- ☆43Jul 28, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- The Family of Diffusion Protein Language Models (DPLM)☆343Jul 25, 2025Updated last year
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,286Aug 24, 2026Updated last week
- Making Protein Language Modeling Accessible to All Biologists☆169Updated this week
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,170Feb 7, 2024Updated 2 years ago
- ☆185Jul 24, 2026Updated last month
- Code for the ProteinMPNN paper☆1,838Aug 14, 2024Updated 2 years ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆423Jul 3, 2023Updated 3 years ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆272Jul 24, 2025Updated last year
- ☆627Feb 6, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…☆376Jun 11, 2025Updated last year
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆279Apr 27, 2025Updated last year
- VenusFSFP: Few-Shot Protein Fitness Prediction☆119Nov 18, 2025Updated 9 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆85Oct 24, 2025Updated 10 months ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆332Oct 28, 2024Updated last year
- Making Protein Design accessible to all via Google Colab!☆934Updated this week
- ☆260Jul 31, 2024Updated 2 years ago
- A generative model for programmable protein design☆828Apr 11, 2024Updated 2 years ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆281Feb 14, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆2,042Aug 1, 2026Updated last month
- Aligning protein generative models with experimental fitness☆145Mar 12, 2026Updated 5 months ago
- User friendly and accurate binder design pipeline☆1,197Aug 12, 2026Updated 2 weeks ago
- ☆218Sep 24, 2024Updated last year
- Official release of the ProGen models☆705Jun 2, 2026Updated 2 months ago
- ☆145Jun 3, 2025Updated last year
- Compressing protein structures effectively with torsion angles☆194Aug 3, 2026Updated 3 weeks ago