Official repository for the ProteinGym benchmarks
☆413Mar 25, 2026Updated 2 weeks ago
Alternatives and similar repositories for ProteinGym
Users that are interested in ProteinGym are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆128Nov 19, 2025Updated 4 months ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆87May 16, 2025Updated 10 months ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆585Mar 8, 2026Updated last month
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆96Apr 24, 2024Updated last year
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆127Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆166Aug 24, 2023Updated 2 years ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆238Mar 26, 2026Updated 2 weeks ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆268Apr 27, 2025Updated 11 months ago
- ☆2,291Mar 19, 2026Updated 3 weeks ago
- 🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)☆149May 29, 2025Updated 10 months ago
- List of papers about Proteins Design using Deep Learning☆1,914Apr 4, 2026Updated last week
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,210Mar 10, 2026Updated last month
- Making Protein Language Modeling Accessible to All Biologists☆159Updated this week
- Making Protein Design accessible to all via Google Colab!☆901Apr 6, 2026Updated last week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- The Family of Diffusion Protein Language Models (DPLM)☆317Jul 25, 2025Updated 8 months ago
- ☆214Sep 24, 2024Updated last year
- The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics☆202Sep 18, 2024Updated last year
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆276Feb 14, 2024Updated 2 years ago
- VenusFSFP: Few-Shot Protein Fitness Prediction☆112Nov 18, 2025Updated 4 months ago
- Code for the ProteinMPNN paper☆1,694Aug 14, 2024Updated last year
- ☆211Apr 21, 2025Updated 11 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated last month
- Implementation for SE(3) diffusion model with application to protein backbone generation☆418Jul 3, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,025Feb 7, 2024Updated 2 years ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆250Jul 24, 2025Updated 8 months ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆331Oct 28, 2024Updated last year
- ☆257Jul 31, 2024Updated last year
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆119Mar 3, 2026Updated last month
- Official release of the ProGen models☆697Aug 4, 2023Updated 2 years ago
- Efficient evolution from protein language models☆222Aug 26, 2023Updated 2 years ago
- ☆137Jun 3, 2025Updated 10 months ago
- Generative Models for Graph-Based Protein Design☆288Dec 24, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆44Aug 5, 2025Updated 8 months ago
- Aligning protein generative models with experimental fitness☆120Mar 12, 2026Updated last month
- ☆563Feb 6, 2025Updated last year
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆82Sep 11, 2025Updated 7 months ago
- ☆126Feb 20, 2026Updated last month
- ☆96Oct 14, 2025Updated 5 months ago