Official repository for the ProteinGym benchmarks
☆459Mar 25, 2026Updated 4 months ago
Alternatives and similar repositories for ProteinGym
Users that are interested in ProteinGym are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆135Nov 19, 2025Updated 8 months ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆620Mar 8, 2026Updated 5 months ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆140Apr 25, 2026Updated 3 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆105Apr 24, 2024Updated 2 years ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆97Jul 20, 2026Updated 3 weeks ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆263Mar 26, 2026Updated 4 months ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆45Aug 5, 2025Updated last year
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆170Aug 24, 2023Updated 2 years ago
- ☆2,897Jul 28, 2026Updated 2 weeks ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆137Apr 23, 2026Updated 3 months ago
- Public Release of ProGen3 family of Models☆114Jul 21, 2025Updated last year
- 🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)☆159Jul 20, 2026Updated 3 weeks ago
- List of papers about Proteins Design using Deep Learning☆1,957Aug 2, 2026Updated last week
- ☆43Jul 28, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- The Family of Diffusion Protein Language Models (DPLM)☆342Jul 25, 2025Updated last year
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,278Updated this week
- Making Protein Language Modeling Accessible to All Biologists☆168Updated this week
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,171Feb 7, 2024Updated 2 years ago
- ☆176Jul 24, 2026Updated 2 weeks ago
- Code for the ProteinMPNN paper☆1,824Aug 14, 2024Updated last year
- Implementation for SE(3) diffusion model with application to protein backbone generation☆423Jul 3, 2023Updated 3 years ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆270Jul 24, 2025Updated last year
- ☆619Feb 6, 2025Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…☆372Jun 11, 2025Updated last year
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆277Apr 27, 2025Updated last year
- VenusFSFP: Few-Shot Protein Fitness Prediction☆119Nov 18, 2025Updated 8 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆84Oct 24, 2025Updated 9 months ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆333Oct 28, 2024Updated last year
- Making Protein Design accessible to all via Google Colab!☆926Apr 6, 2026Updated 4 months ago
- ☆259Jul 31, 2024Updated 2 years ago
- A generative model for programmable protein design☆827Apr 11, 2024Updated 2 years ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆280Feb 14, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆2,020Aug 1, 2026Updated last week
- Aligning protein generative models with experimental fitness☆124Mar 12, 2026Updated 5 months ago
- User friendly and accurate binder design pipeline☆1,184May 11, 2026Updated 3 months ago
- ☆218Sep 24, 2024Updated last year
- Official release of the ProGen models☆705Jun 2, 2026Updated 2 months ago
- ☆144Jun 3, 2025Updated last year
- Compressing protein structures effectively with torsion angles☆195Aug 3, 2026Updated last week