Official repository for the ProteinGym benchmarks
☆391Jan 12, 2026Updated last month
Alternatives and similar repositories for ProteinGym
Users that are interested in ProteinGym are comparing it to the libraries listed below
Sorting:
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆128Nov 19, 2025Updated 3 months ago
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆82May 16, 2025Updated 9 months ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆162Aug 24, 2023Updated 2 years ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆567Nov 19, 2025Updated 3 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆93Apr 24, 2024Updated last year
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆122Feb 7, 2026Updated 3 weeks ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆226Aug 7, 2025Updated 6 months ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆267Apr 27, 2025Updated 10 months ago
- Making Protein Language Modeling Accessible to All Biologists☆154Feb 24, 2026Updated last week
- 🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)☆147May 29, 2025Updated 9 months ago
- The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics☆200Sep 18, 2024Updated last year
- Foldseek enables fast and sensitive comparisons of large structure sets.☆1,169Feb 21, 2026Updated last week
- List of papers about Proteins Design using Deep Learning☆1,886Feb 21, 2026Updated last week
- Making Protein Design accessible to all via Google Colab!☆886Dec 8, 2025Updated 2 months ago
- ☆212Sep 24, 2024Updated last year
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆274Feb 14, 2024Updated 2 years ago
- ☆209Apr 21, 2025Updated 10 months ago
- Structure-conditioned masked language modeling for protein sequence design☆71Jan 31, 2024Updated 2 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆328Oct 28, 2024Updated last year
- ☆255Jul 31, 2024Updated last year
- ☆2,249Jan 26, 2026Updated last month
- Implementation for SE(3) diffusion model with application to protein backbone generation☆414Jul 3, 2023Updated 2 years ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆111Sep 30, 2024Updated last year
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆236Jul 24, 2025Updated 7 months ago
- Aligning protein generative models with experimental fitness☆119Oct 16, 2025Updated 4 months ago
- Generative Models for Graph-Based Protein Design☆284Dec 24, 2020Updated 5 years ago
- ☆95Oct 14, 2025Updated 4 months ago
- The Family of Diffusion Protein Language Models (DPLM)☆305Jul 25, 2025Updated 7 months ago
- Efficient evolution from protein language models☆221Aug 26, 2023Updated 2 years ago
- Code for the ProteinMPNN paper☆1,636Aug 14, 2024Updated last year
- Official release of the ProGen models☆692Aug 4, 2023Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆232Aug 27, 2025Updated 6 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated last week
- Compressing protein structures effectively with torsion angles☆187Feb 10, 2026Updated 3 weeks ago
- ☆134Jun 3, 2025Updated 9 months ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆367Nov 7, 2025Updated 3 months ago
- ☆547Feb 6, 2025Updated last year
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆73Jul 2, 2025Updated 8 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆115Oct 30, 2025Updated 4 months ago