OATML-Markslab / ProteinGymLinks
Official repository for the ProteinGym benchmarks
β337Updated 2 weeks ago
Alternatives and similar repositories for ProteinGym
Users that are interested in ProteinGym are comparing it to the libraries listed below
Sorting:
- βπ» Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)β338Updated 2 years ago
- β250Updated last year
- Joint sequence and structure generation with RoseTTAFold sequence space diffusionβ316Updated 9 months ago
- RoseTTAFold2 protein/nucleic acid complex predictionβ361Updated last year
- List of computational protein design research labsβ188Updated 5 months ago
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)β480Updated last week
- Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodiesβ366Updated last year
- Protein hallucination and inpainting with RoseTTAFoldβ263Updated 2 years ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models β¦β250Updated 3 months ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Modelsβ311Updated 6 months ago
- β255Updated 3 months ago
- β197Updated 3 months ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.β264Updated last year
- A collection of *fold* toolsβ295Updated 10 months ago
- Efficient evolution from protein language modelsβ211Updated last year
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-shoβ¦β275Updated last month
- Diffusion-based all-atom protein generative model.β210Updated 5 months ago
- β418Updated 6 months ago
- BioPhi is an open-source antibody design platform. It features methods for automated antibody humanization (Sapiens), humanness evaluatioβ¦β198Updated 2 months ago
- β198Updated 10 months ago
- Colab Notebooks covering deep learning tools for biomolecular structure prediction and designβ411Updated 4 months ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"β160Updated last year
- β338Updated 11 months ago
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative modelβ303Updated last year
- Bilingual Language Model for Protein Sequence and Structureβ262Updated 7 months ago
- Public RFDiffusionAA repoβ422Updated last year
- PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pocketsβ193Updated 3 months ago
- Python code for fine-tuning AlphaFold to perform protein-peptide binding predictionsβ154Updated last year
- User friendly and accurate binder design pipelineβ621Updated 2 weeks ago
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structureβ288Updated 2 years ago