☆33Dec 6, 2025Updated 8 months ago
Alternatives and similar repositories for pairmixer
Users that are interested in pairmixer are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- MiniFold: Simple, Fast and Accurate Protein Structure Prediction☆94Jul 10, 2025Updated last year
- ☆40Jul 7, 2026Updated last month
- This repository enables inference and sampling for Dyno Psi-1, a de novo miniprotein binder design model.☆23Mar 24, 2026Updated 4 months ago
- A drop-in replacement for Rosetta Relax☆30Jan 30, 2026Updated 6 months ago
- Protein Sequence Evolutionary Information Language Model☆14Oct 5, 2023Updated 2 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- protein structure generation with sparse all-atom denoising models☆62Jul 7, 2026Updated last month
- Tutorial files☆12Aug 7, 2024Updated 2 years ago
- ☆15Jun 25, 2026Updated last month
- ☆12Nov 16, 2023Updated 2 years ago
- Biomolecular co-folding, binder filtering, and nanobody design☆85Jun 28, 2026Updated last month
- Fast protein backbone generation with SE(3) flow matching.☆326Jul 19, 2024Updated 2 years ago
- ☆17Dec 14, 2025Updated 7 months ago
- Metadiffusion implemented in Boltz-2☆24Feb 23, 2026Updated 5 months ago
- [NeurIPS 2025 spotlight] Efficient factorized variant of the IPA module.☆47Nov 14, 2025Updated 8 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Efficient implementatin of ESM family.☆86Sep 9, 2025Updated 11 months ago
- ☆148May 18, 2026Updated 2 months ago
- The codebase for EnzyGen2☆30Apr 20, 2026Updated 3 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆127May 27, 2025Updated last year
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆127Apr 23, 2026Updated 3 months ago
- A generalized computational framework for biomolecular modeling.☆439Updated this week
- Adapting protein language models for structure-conditioned design☆42Aug 5, 2024Updated 2 years ago
- A standardized protein design benchmark for motif-scaffolding problems☆84Updated this week
- Genie 3 is a fast, all-atom SE(3)-equivariant diffusion model for protein design. It achieves state-of-the-art performance on uncondition…☆122May 10, 2026Updated 2 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- Unleash MMseqs2’s power for your protein and nucleotide sequence analysis. Fast, simple, seamless!☆47Jun 25, 2026Updated last month
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆64Feb 3, 2026Updated 6 months ago
- Propose CDR single-point mutations that rescue antibody expression without disrupting antigen binding, using bound vs. unbound ProteinMPN…☆15May 26, 2026Updated 2 months ago
- ☆121Dec 7, 2022Updated 3 years ago
- ☆64Sep 14, 2023Updated 2 years ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆270Jul 24, 2025Updated last year
- Generative model for protein binder design for protein and small molecule targets. Combines a pretrained flow-based generative model (bui…☆411Updated this week
- ☆42Mar 30, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Sidechain conditioning and modeling for full-atom protein sequence design☆145Nov 11, 2025Updated 8 months ago
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆106Jul 30, 2024Updated 2 years ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆83May 1, 2026Updated 3 months ago
- Kuhlman Lab Installation of AlphaFold3☆42Mar 26, 2026Updated 4 months ago
- TMol☆84Updated this week
- Framework for modified sampling from biomolecular generative models☆24Updated this week
- Flexibility-conditioned protein structure design☆36Mar 10, 2026Updated 5 months ago