☆259Jul 31, 2024Updated last year
Alternatives and similar repositories for protein-sequence-models
Users that are interested in protein-sequence-models are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆128Apr 23, 2026Updated 2 months ago
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆170Aug 24, 2023Updated 2 years ago
- Diffusion-based all-atom protein generative model.☆237Aug 27, 2025Updated 10 months ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated 4 months ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆35May 28, 2024Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆274Apr 27, 2025Updated last year
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆671Jan 15, 2026Updated 5 months ago
- Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different dom…☆739Dec 11, 2022Updated 3 years ago
- Official repository for the ProteinGym benchmarks☆440Mar 25, 2026Updated 3 months ago
- Listing of papers about machine learning for proteins.☆1,712May 31, 2024Updated 2 years ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆132Nov 19, 2025Updated 7 months ago
- ☆79Oct 27, 2021Updated 4 years ago
- A collection of *fold* tools☆304Aug 8, 2025Updated 10 months ago
- Fitness landscape exploration sandbox for biological sequence design.☆173Feb 16, 2023Updated 3 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆332Oct 28, 2024Updated last year
- ☆215Sep 24, 2024Updated last year
- Ankh: Optimized Protein Language Model☆248Jun 16, 2025Updated last year
- List of papers about Proteins Design using Deep Learning☆1,939Updated this week
- A compilation of deep learning methods for protein design☆96Nov 5, 2022Updated 3 years ago
- Diffusion models of protein structure; trigonometry and attention are all you need!☆566Dec 12, 2023Updated 2 years ago
- Aligning protein generative models with experimental fitness☆124Mar 12, 2026Updated 3 months ago
- The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics☆202Sep 18, 2024Updated last year
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆280Feb 14, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Generative Models for Graph-Based Protein Design☆290Dec 24, 2020Updated 5 years ago
- Making Protein Design accessible to all via Google Colab!☆918Apr 6, 2026Updated 2 months ago
- ProtTrans is providing state of the art pretrained language models for proteins. ProtTrans was trained on thousands of GPUs from Summit a…☆1,312May 22, 2025Updated last year
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆179Apr 6, 2023Updated 3 years ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆424Jul 3, 2023Updated 2 years ago
- RITA is a family of autoregressive protein models, developed by LightOn in collaboration with the OATML group at Oxford and the Debora Ma…☆100Jan 24, 2023Updated 3 years ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆155Apr 16, 2025Updated last year
- The Family of Diffusion Protein Language Models (DPLM)☆339Jul 25, 2025Updated 11 months ago
- GearNet and Geometric Pretraining Methods for Protein Structure Representation Learning, ICLR'2023 (https://arxiv.org/abs/2203.06125)☆321Jun 13, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Compressing protein structures effectively with torsion angles☆193Feb 10, 2026Updated 4 months ago
- Fast protein backbone generation with SE(3) flow matching.☆326Jul 19, 2024Updated last year
- Evolutionary couplings from protein and RNA sequence alignments☆309Apr 20, 2026Updated 2 months ago
- Evolutionary Scale Modeling (esm): Pretrained language models for proteins☆4,140Feb 7, 2024Updated 2 years ago
- ☆81Jun 29, 2025Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆188Apr 21, 2024Updated 2 years ago
- Code for our paper "Protein sequence design with a learned potential"☆82Sep 8, 2023Updated 2 years ago