Implementation for SE(3) diffusion model with application to protein backbone generation
☆414Jul 3, 2023Updated 2 years ago
Alternatives and similar repositories for se3_diffusion
Users that are interested in se3_diffusion are comparing it to the libraries listed below
Sorting:
- Fast protein backbone generation with SE(3) flow matching.☆314Jul 19, 2024Updated last year
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆274Dec 10, 2024Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆186Apr 21, 2024Updated last year
- Diffusion-based all-atom protein generative model.☆232Aug 27, 2025Updated 6 months ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆74Aug 11, 2023Updated 2 years ago
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆516Oct 21, 2025Updated 4 months ago
- ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)☆354Jun 29, 2023Updated 2 years ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆180Apr 6, 2023Updated 2 years ago
- ☆216Mar 2, 2024Updated 2 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆328Oct 28, 2024Updated last year
- Diffusion models of protein structure; trigonometry and attention are all you need!☆564Dec 12, 2023Updated 2 years ago
- A generative model for programmable protein design☆798Apr 11, 2024Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆85Jun 23, 2024Updated last year
- Public RFDiffusionAA repo☆464Jul 9, 2024Updated last year
- ☆209Apr 21, 2025Updated 10 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆135Nov 11, 2025Updated 3 months ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆236Jul 24, 2025Updated 7 months ago
- ☆65Sep 14, 2023Updated 2 years ago
- Making Protein Design accessible to all via Google Colab!☆886Dec 8, 2025Updated 2 months ago
- Protein Design with Guided Discrete Diffusion☆141Feb 21, 2024Updated 2 years ago
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆188Jun 24, 2024Updated last year
- Generation of protein sequences and evolutionary alignments via discrete diffusion models☆663Jan 15, 2026Updated last month
- ☆134Jun 3, 2025Updated 9 months ago
- Code for the ProteinMPNN paper☆1,636Aug 14, 2024Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆71Jan 31, 2024Updated 2 years ago
- Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking☆1,440May 2, 2025Updated 10 months ago
- Code for running RFdiffusion☆2,755Nov 20, 2025Updated 3 months ago
- List of papers about Proteins Design using Deep Learning☆1,886Feb 21, 2026Updated last week
- ☆547Feb 6, 2025Updated last year
- ☆793May 27, 2025Updated 9 months ago
- The Family of Diffusion Protein Language Models (DPLM)☆305Jul 25, 2025Updated 7 months ago
- Aligning protein generative models with experimental fitness☆119Oct 16, 2025Updated 4 months ago
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆105Jul 30, 2024Updated last year
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆267Apr 27, 2025Updated 10 months ago
- Versatile computational pipeline for processing protein structure data for deep learning applications.☆274Feb 14, 2024Updated 2 years ago
- Protein hallucination and inpainting with RoseTTAFold☆279Mar 30, 2023Updated 2 years ago
- Public Release of ProGen3 family of Models☆100Jul 21, 2025Updated 7 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆59May 6, 2024Updated last year
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆81Mar 7, 2024Updated last year