Adapting protein language models for structure-conditioned design
☆40Aug 5, 2024Updated last year
Alternatives and similar repositories for proseLM-public
Users that are interested in proseLM-public are comparing it to the libraries listed below
Sorting:
- A conditionally adapted protein language model for the generation of enzymes☆23Nov 26, 2024Updated last year
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆105Jul 30, 2024Updated last year
- Public Release of ProGen3 family of Models☆100Jul 21, 2025Updated 7 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆59May 6, 2024Updated last year
- Diffusion-based all-atom protein generative model.☆232Aug 27, 2025Updated 6 months ago
- ☆31Dec 12, 2024Updated last year
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆70Jul 19, 2024Updated last year
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆226Aug 7, 2025Updated 6 months ago
- ☆65Sep 14, 2023Updated 2 years ago
- ☆18Oct 30, 2023Updated 2 years ago
- ☆105Feb 12, 2026Updated 2 weeks ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆120May 27, 2025Updated 9 months ago
- ☆39Jun 12, 2025Updated 8 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆80Oct 24, 2025Updated 4 months ago
- ☆19Nov 21, 2025Updated 3 months ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆328Oct 28, 2024Updated last year
- ☆122Feb 20, 2026Updated last week
- Structure-conditioned masked language modeling for protein sequence design☆71Jan 31, 2024Updated 2 years ago
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆50Dec 2, 2025Updated 3 months ago
- Aligning protein generative models with experimental fitness☆118Oct 16, 2025Updated 4 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆75Jan 27, 2026Updated last month
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆274Dec 10, 2024Updated last year
- The Family of Diffusion Protein Language Models (DPLM)☆305Jul 25, 2025Updated 7 months ago
- Consolidated repository to perform RLXF☆40Feb 5, 2026Updated 3 weeks ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆186Apr 21, 2024Updated last year
- Public RFDiffusionAA repo☆464Jul 9, 2024Updated last year
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆78Sep 11, 2025Updated 5 months ago
- ☆239Feb 12, 2026Updated 2 weeks ago
- Protein representation and design under a single training scheme☆24Updated this week
- ☆212Sep 24, 2024Updated last year
- ☆117Dec 7, 2022Updated 3 years ago
- The first large protein language model trained follows structure instructions.☆94May 20, 2025Updated 9 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆150Apr 16, 2025Updated 10 months ago
- PLM based active learning model for protein engineering☆85Aug 6, 2024Updated last year
- Efficient implementatin of ESM family.☆80Sep 9, 2025Updated 5 months ago
- ☆80Feb 11, 2026Updated 2 weeks ago
- ☆12Nov 22, 2024Updated last year
- Fast protein backbone generation with SE(3) flow matching.☆314Jul 19, 2024Updated last year
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Jul 29, 2024Updated last year