etowahadams / interprotLinks
[ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.
☆120Updated last month
Alternatives and similar repositories for interprot
Users that are interested in interprot are comparing it to the libraries listed below
Sorting:
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆136Updated this week
- bioinformatics tools running on modal☆107Updated 2 weeks ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆156Updated 3 months ago
- ProtMamba: a homology-aware but alignment-free protein state space model☆80Updated 5 months ago
- A Modular Architecture for Deep Learning Systems☆47Updated 5 months ago
- A short course on proteins and protein design aimed at early career students☆160Updated last year
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆34Updated 11 months ago
- ☆132Updated last year
- Sandbox for Deep-Learning based Computational Protein Design☆117Updated last month
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆144Updated 7 months ago
- ☆71Updated last year
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆115Updated 5 months ago
- Minimal AlphaFold☆55Updated last year
- Protein Design by Machine Learning guided Directed Evolution☆46Updated 7 months ago
- ML-guided enzyme engineering☆69Updated last month
- ☆58Updated last year
- reasoning model trained using GRPO towards rosetta REF2015 for protein stability☆99Updated last month
- Official repository for the paper "Tranception: Protein Fitness Prediction with Autoregressive Transformers and Inference-time Retrieval"☆160Updated 2 years ago
- Learning Universal Representations of Intermolecular Interactions with ATOMICA☆191Updated 2 months ago
- Directed evolution of proteins in sequence space with gradients☆93Updated last month
- PLM based active learning model for protein engineering☆84Updated last year
- ☆116Updated 4 months ago
- Results and data from the pilot round of the Protein Engineering Tournament☆30Updated 7 months ago
- Dataset and package for working with protein-protein interactions in 3D☆96Updated 6 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆86Updated last year
- Repository for mRNA Paper and CodonBERT publication.☆134Updated last year
- A partially latent flow matching model for the joint generation of a protein’s amino acid sequence and full atomistic structure, includin…☆237Updated last month
- Benchmark for LLM-based Agents in Computational Biology☆62Updated last month
- Protein language model customized for antibodies☆146Updated 8 months ago
- Consolidated repository to perform RLXF☆35Updated last month