etowahadams / interprot
☆99Updated last month
Alternatives and similar repositories for interprot:
Users that are interested in interprot are comparing it to the libraries listed below
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆114Updated last month
- ProtMamba: a homology-aware but alignment-free protein state space model☆57Updated this week
- bioinformatics tools running on modal☆87Updated 2 weeks ago
- A Modular Architecture for Deep Learning Systems☆40Updated last week
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆89Updated this week
- This repo contains the results data for Round 1 of Adaptyv Bio’s EGFR Protein Design Competition.☆33Updated 3 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆72Updated 3 weeks ago
- ML-guided enzyme engineering☆58Updated 3 weeks ago
- Discovering Interpretable Features in Protein Language Models via Sparse Autoencoders☆164Updated 2 months ago
- Minimal AlphaFold☆54Updated 7 months ago
- PLM based active learning model for protein engineering☆74Updated 7 months ago
- Directed evolution of proteins in sequence space with gradients☆83Updated 7 months ago
- AI-Driven Digital Organism (AIDO) is a system of multiscale foundation models for predicting, simulating and programming biology at all l…☆71Updated 2 months ago
- Aligning protein generative models with experimental fitness☆88Updated 5 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆114Updated 3 months ago
- ☆26Updated 10 months ago
- BioDiscoveryAgent is an LLM-based AI agent for closed-loop design of genetic perturbation experiments☆53Updated 4 months ago
- ☆115Updated 7 months ago
- Plugin for folding sequences directly in PyMOL☆91Updated last month
- Results and data from the pilot round of the Protein Engineering Tournament☆28Updated last week
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆70Updated 11 months ago
- Dataset and package for working with protein-protein interactions in 3D☆90Updated last month
- Benchmark for LLM-based Agents in Computational Biology☆27Updated this week
- Sandbox for Deep-Learning based Computational Protein Design☆109Updated last month
- A standardized protein design benchmark for motif-scaffolding problems☆43Updated 2 weeks ago
- Repository for mRNA Paper and CodonBERT publication.☆126Updated 9 months ago
- LoRA for protein language models☆36Updated last year
- ☆57Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆70Updated 2 months ago
- AIDO.ModelGenerator is a software stack powering the development of an AI-driven Digital Organism (AIDO) by enabling researchers to adapt…☆41Updated last week