All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins
☆120May 27, 2025Updated 9 months ago
Alternatives and similar repositories for plaid
Users that are interested in plaid are comparing it to the libraries listed below
Sorting:
- Sidechain conditioning and modeling for full-atom protein sequence design☆135Nov 11, 2025Updated 3 months ago
- Structure-conditioned masked language modeling for protein sequence design☆71Jan 31, 2024Updated 2 years ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆150Apr 16, 2025Updated 10 months ago
- Protein representation and design under a single training scheme☆24Updated this week
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆50Dec 2, 2025Updated 3 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆75Jan 27, 2026Updated last month
- Official repository for DiffPepBuilder and DiffPepDock tools☆119Oct 24, 2025Updated 4 months ago
- ☆239Feb 12, 2026Updated 2 weeks ago
- ☆134Jun 3, 2025Updated 9 months ago
- Aligning protein generative models with experimental fitness☆119Oct 16, 2025Updated 4 months ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆236Jul 24, 2025Updated 7 months ago
- ☆17Dec 23, 2024Updated last year
- Code for the paper "Learning to engineer protein flexibility".☆22Jan 21, 2026Updated last month
- Diffusion-based all-atom protein generative model.☆232Aug 27, 2025Updated 6 months ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆166Jul 30, 2025Updated 7 months ago
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆188Jun 24, 2024Updated last year
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆226Aug 7, 2025Updated 6 months ago
- Versatile human antibody sequence design☆22May 27, 2025Updated 9 months ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆414Jul 3, 2023Updated 2 years ago
- Protein Engineering via Exploration of an Energy Landscape☆106Updated this week
- The Family of Diffusion Protein Language Models (DPLM)☆305Jul 25, 2025Updated 7 months ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆42Aug 5, 2025Updated 6 months ago
- ☆65Sep 14, 2023Updated 2 years ago
- Official repository of EnzymeFlow☆98Dec 7, 2024Updated last year
- Fast protein backbone generation with SE(3) flow matching.☆314Jul 19, 2024Updated last year
- Neural Iterative Selection-Expansion using LigandMPNN/LASErMPNN and Boltz-2x☆31Feb 12, 2026Updated 2 weeks ago
- ☆61Apr 9, 2024Updated last year
- ☆15Jun 3, 2025Updated 9 months ago
- Adapting protein language models for structure-conditioned design☆40Aug 5, 2024Updated last year
- User friendly and accurate binder design pipeline☆1,023Feb 5, 2026Updated 3 weeks ago
- Template-based protein design with Raygun☆77Feb 7, 2026Updated 3 weeks ago
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated last week
- ☆547Feb 6, 2025Updated last year
- Finding patch of conserved amino acid sites in 3D structure☆13Apr 13, 2025Updated 10 months ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆170Feb 6, 2026Updated 3 weeks ago
- A generative model for programmable protein design☆798Apr 11, 2024Updated last year
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆129Nov 19, 2025Updated 3 months ago
- ☆40Sep 17, 2024Updated last year
- ☆47Sep 16, 2024Updated last year