amyxlu / plaidLinks
All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins
☆92Updated last week
Alternatives and similar repositories for plaid
Users that are interested in plaid are comparing it to the libraries listed below
Sorting:
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆122Updated last month
- Sidechain conditioning and modeling for full-atom protein sequence design☆106Updated 3 months ago
- Aligning protein generative models with experimental fitness☆96Updated 3 weeks ago
- A standardized protein design benchmark for motif-scaffolding problems☆59Updated last month
- ☆112Updated this week
- ☆65Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆62Updated last year
- A benchmark for 3D biomolecular structure prediction models☆60Updated 3 weeks ago
- multi-objective protein design☆51Updated this week
- ☆89Updated 7 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆75Updated 11 months ago
- ☆94Updated this week
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆77Updated last year
- AlphaBind code + model accompanying pre-print☆56Updated 5 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆44Updated 4 months ago
- ProteusAI is a library for the machine learning driven engineering of proteins. The library enables workflows from protein structure pred…☆56Updated 3 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆55Updated 10 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆71Updated this week
- Official repository for DiffPepBuilder and DiffPepDock tools☆92Updated this week
- ☆39Updated this week
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆59Updated last year
- ☆108Updated 2 years ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆94Updated 10 months ago
- Official repository of EnzymeFlow☆92Updated 5 months ago
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆122Updated 6 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆42Updated 6 months ago
- ☆67Updated 2 months ago
- ☆81Updated 2 months ago
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆74Updated 3 weeks ago
- Efficient implementatin of ESM family.☆56Updated 4 months ago