Alternatives and similar repositories for plaid

Users that are interested in plaid are comparing it to the libraries listed below

• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆138Updated 5 months ago
• blt2114 / MotifBench
  A standardized protein design benchmark for motif-scaffolding problems
  ☆68Updated 2 months ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆107Updated 2 months ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆121Updated 3 months ago
• levinthal / Pallatom
  ☆118Updated 4 months ago
• escalante-bio / mosaic
  composite-objective protein design
  ☆102Updated last week
• SantiagoMille / germinal
  Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.
  ☆125Updated this week
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆94Updated 10 months ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆86Updated 4 months ago
• RosettaCommons / modelforge
  Central repository for biomolecular foundation models with shared trainers and pipeline components
  ☆174Updated 3 weeks ago
• alexechu / protpardelle
  ☆65Updated 2 years ago
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆101Updated 2 weeks ago
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆81Updated last year
• yehlincho / BoltzDesign1
  ☆209Updated last month
• pinder-org / pinder
  PINDER: The Protein INteraction Dataset and Evaluation Resource
  ☆135Updated 10 months ago
• Profluent-AI / progen3
  Public Release of ProGen3 family of Models
  ☆79Updated 2 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆71Updated 6 months ago
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆98Updated last year
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆69Updated last year
• RosettaCommons / atomworks
  A generalized computational framework for biomolecular modeling.
  ☆297Updated last week
• ai4protein / VenusREM
  🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)
  ☆107Updated last month
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆74Updated last month
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆71Updated 3 months ago
• baker-laboratory / CA_RFDiffusion
  ☆72Updated 4 months ago
• lujiarui / Str2Str
  Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
  ☆78Updated last year
• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆119Updated 6 months ago
• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆66Updated 4 months ago
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆74Updated last month
• zhanghaicang / carbonmatrix_public
  ☆116Updated 3 months ago
• Kuhlman-Lab / evopro
  ☆88Updated 2 months ago