Alternatives and similar repositories for plaid

Users that are interested in plaid are comparing it to the libraries listed below

• blt2114 / MotifBench
  A standardized protein design benchmark for motif-scaffolding problems
  ☆67Updated last month
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆138Updated 5 months ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆105Updated last month
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆117Updated 2 months ago
• escalante-bio / mosaic
  composite-objective protein design
  ☆95Updated this week
• levinthal / Pallatom
  ☆115Updated 3 months ago
• alexechu / protpardelle
  ☆65Updated 2 years ago
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆100Updated 2 weeks ago
• RosettaCommons / modelforge
  Central repository for biomolecular foundation models with shared trainers and pipeline components
  ☆146Updated this week
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆84Updated 3 months ago
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆80Updated last year
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆69Updated last year
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆70Updated 3 months ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆94Updated 9 months ago
• baker-laboratory / CA_RFDiffusion
  ☆71Updated 3 months ago
• ai4protein / VenusREM
  🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)
  ☆100Updated last month
• RosettaCommons / atomworks
  A generalized computational framework for biomolecular modeling.
  ☆240Updated this week
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆52Updated 3 weeks ago
• Profluent-AI / progen3
  Public Release of ProGen3 family of Models
  ☆80Updated last month
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆72Updated last month
• KULL-Centre / _2024_cagiada_stability
  ☆71Updated 6 months ago
• lujiarui / Str2Str
  Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)
  ☆78Updated last year
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆98Updated last year
• Exscientia / abodybuilder3
  ☆68Updated 10 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆72Updated last week
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆91Updated this week
• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆65Updated 4 months ago
• Immortals-33 / Scaffold-Lab
  A comprehensive benchmark on the performances of multiple protein backbone generative models.
  ☆64Updated 3 months ago
• TencentAI4S / IgGM
  Official Implementation of IgGM
  ☆82Updated 3 weeks ago