Alternatives and similar repositories for plaid

Users that are interested in plaid are comparing it to the libraries listed below

• blt2114 / MotifBench
  A standardized protein design benchmark for motif-scaffolding problems
  ☆70Updated 4 months ago
• evo-design / protein-dpo
  Aligning protein generative models with experimental fitness
  ☆113Updated last month
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆145Updated 7 months ago
• escalante-bio / mosaic
  composite-objective protein design
  ☆121Updated this week
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆127Updated last month
• SantiagoMille / germinal
  Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.
  ☆165Updated 2 weeks ago
• Profluent-AI / progen3
  Public Release of ProGen3 family of Models
  ☆91Updated 4 months ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆97Updated last year
• alexechu / protpardelle
  ☆65Updated 2 years ago
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆84Updated last year
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆110Updated last month
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆89Updated 6 months ago
• levinthal / Pallatom
  ☆128Updated 6 months ago
• Profluent-AI / E1
  Profluent-E1 family of Protein Encoder Models
  ☆93Updated 2 weeks ago
• ai4protein / VenusREM
  🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)
  ☆113Updated 3 months ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆72Updated last week
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆69Updated last year
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆78Updated 3 months ago
• KULL-Centre / _2024_cagiada_stability
  ☆71Updated 8 months ago
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆98Updated last year
• AI4PDLab / ProtRL
  ☆97Updated last week
• baker-laboratory / CA_RFDiffusion
  ☆74Updated 6 months ago
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆65Updated 3 months ago
• Kuhlman-Lab / evopro
  ☆92Updated last month
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated 2 years ago
• yoakiyama / MSA_Pairformer
  ☆119Updated 3 weeks ago
• jwohlwend / minifold
  MiniFold: Simple, Fast and Accurate Protein Structure Prediction
  ☆77Updated 5 months ago
• programmablebio / pepmlm
  Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling
  ☆106Updated last month
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆86Updated 4 months ago
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆144Updated 3 months ago