ai4protein / ProtSSNLinks
𧬠Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2025).
β69Updated 2 months ago
Alternatives and similar repositories for ProtSSN
Users that are interested in ProtSSN are comparing it to the libraries listed below
Sorting:
- β31Updated 11 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)β40Updated 7 months ago
- Pretrainable geometric graph neural network for antibody affinity maturationβ59Updated 3 months ago
- β60Updated last year
- 𧬠Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)β83Updated last month
- β35Updated 8 months ago
- β115Updated last month
- β100Updated last month
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Designβ73Updated 2 months ago
- Pro-FSFP: Few-Shot Protein Fitness Predictionβ89Updated 2 months ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learningβ63Updated last year
- Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutationsβ63Updated 5 months ago
- Predicts the solubility and usability for purification of proteins expressed in E. coli using protein language modelsβ38Updated 7 months ago
- Structure-conditioned masked language modeling for protein sequence designβ64Updated last year
- β68Updated last month
- Code for humanization of antibody and nanobodyβ44Updated 7 months ago
- β81Updated last month
- Official repository of GENzymeβ53Updated 7 months ago
- Versatile Embedding Network for Understanding protein Sequencesβ21Updated 2 months ago
- β47Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.β60Updated last year
- Structure-Informed Protein Language Modelβ34Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.β78Updated last year
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-proteiβ¦β44Updated 7 months ago
- HyperMPNN β A general strategy to design thermostable proteins learned from hyperthermophilesβ60Updated 2 weeks ago
- Extension of ThermoMPNN for double mutant predictionsβ36Updated 2 weeks ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant β¦β29Updated 7 months ago
- ML-optimized library design with improved fitness and diversity for protein engineeringβ35Updated 11 months ago
- Antibody-specific masked language modelβ57Updated 2 years ago
- This is the official repository of paper - GeoAB: Towards Realistic Antibody Design and Reliable Affinity Maturation (ICML2024)β40Updated last year