🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2025).
☆97Sep 29, 2026Updated last month
Alternatives and similar repositories for ProtSSN
Users that are interested in ProtSSN are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆148Sep 29, 2026Updated last month
- 🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)☆166Sep 29, 2026Updated last month
- ☆31Aug 12, 2024Updated 2 years ago
- Official repository for the ProteinGym benchmarks☆481Mar 25, 2026Updated 7 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆107Apr 24, 2024Updated 2 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆645Mar 8, 2026Updated 7 months ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆72Aug 13, 2025Updated last year
- A conditionally adapted protein language model for the generation of enzymes☆24Nov 26, 2024Updated last year
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆279Sep 9, 2026Updated last month
- 🏭 AI agent platform with skills for protein engineering, the noob-friendly AI tutorial tool for life science professionals. (ACL Demo202…☆255Sep 25, 2026Updated last month
- 📈 Fusion of sequence, structure and feature information to improve protein solubility prediction (IEEE BIBM 2024).☆37May 16, 2025Updated last year
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆55Dec 3, 2024Updated last year
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆155Apr 16, 2025Updated last year
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆334Oct 28, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆23Jun 26, 2023Updated 3 years ago
- ☆221Sep 24, 2024Updated 2 years ago
- Graph Denoising Diffusion for Inverse Protein Folding(NeurIPS 2023)☆76May 20, 2026Updated 5 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆137Nov 19, 2025Updated 11 months ago
- Source code of PETA: Evaluating the Impact of Protein Transfer Learning with Sub-word Tokenization on Downstream Applications.☆33May 16, 2025Updated last year
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆87May 27, 2026Updated 5 months ago
- 🧬 Large-scale protein functional residue or fragment prediction benchmark. (ICLR 2026)☆25Apr 10, 2026Updated 6 months ago
- CLEAN: a contrastive learning model for high-quality functional prediction of proteins☆334Apr 6, 2025Updated last year
- DFMDock (Denoising Force Matching Dock), a diffusion model that unifies sampling and ranking within a single framework.☆59Jul 22, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆115Oct 23, 2023Updated 3 years ago
- Expert-Guided Protein Language Models enable Accurate and Blazingly Fast Fitness Prediction☆18Feb 6, 2026Updated 8 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆65May 21, 2025Updated last year
- Versatile Embedding Network for Understanding protein Sequences☆26May 16, 2025Updated last year
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆329Nov 15, 2025Updated 11 months ago
- 🎈 Structure-aware adapter fine-tuning PLMs, with high training speed and impressive performance (Journal of Chemical Information and Mod…☆27May 16, 2025Updated last year
- The first large protein language model trained follows structure instructions.☆103May 20, 2025Updated last year
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆279Apr 27, 2025Updated last year
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆47Aug 5, 2025Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- LM-GVP: A Generalizable Deep Learning Framework for Protein Property Prediction from Sequence and Structure☆67Mar 4, 2024Updated 2 years ago
- A standardized protein design benchmark for motif-scaffolding problems☆83Aug 27, 2026Updated 2 months ago
- Aligning protein generative models with experimental fitness☆154Mar 12, 2026Updated 7 months ago
- Making Protein Language Modeling Accessible to All Biologists☆171Updated this week
- Extension of ThermoMPNN for double mutant predictions☆66Mar 23, 2026Updated 7 months ago
- The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics☆207Oct 14, 2026Updated 2 weeks ago
- ☆145Jun 3, 2025Updated last year