evo-design / protein-dpoLinks
Aligning protein generative models with experimental fitness
☆116Updated 3 months ago
Alternatives and similar repositories for protein-dpo
Users that are interested in protein-dpo are comparing it to the libraries listed below
Sorting:
- Efficient implementatin of ESM family.☆78Updated 4 months ago
- ☆64Updated 2 years ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆115Updated 7 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆85Updated last year
- A standardized protein design benchmark for motif-scaffolding problems☆72Updated last month
- Sidechain conditioning and modeling for full-atom protein sequence design☆132Updated 2 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆91Updated 7 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆41Updated last year
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆127Updated 2 months ago
- ☆134Updated 7 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆88Updated last year
- AlphaBind code + model accompanying pre-print☆87Updated 5 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆146Updated 9 months ago
- Code for humanization of antibody and nanobody☆68Updated 4 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆109Updated 2 months ago
- ☆124Updated 3 weeks ago
- Official repository of EnzymeFlow☆97Updated last year
- ☆119Updated 2 weeks ago
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆40Updated 5 months ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆122Updated 5 months ago
- Public Release of ProGen3 family of Models☆93Updated 5 months ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆80Updated last year
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆42Updated 5 months ago
- Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.☆180Updated last month
- Structure-conditioned masked language modeling for protein sequence design☆70Updated last year
- Fitness landscapes for antibodies☆132Updated 3 weeks ago
- Dataset and package for working with protein-protein interactions in 3D☆100Updated 8 months ago
- ☆73Updated last year
- ☆74Updated 4 years ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆110Updated last year