Aligning protein generative models with experimental fitness
☆122Mar 12, 2026Updated 3 months ago
Alternatives and similar repositories for protein-dpo
Users that are interested in protein-dpo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Sidechain conditioning and modeling for full-atom protein sequence design☆140Nov 11, 2025Updated 7 months ago
- Protein representation and design under a single training scheme☆24May 17, 2026Updated last month
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆44Aug 5, 2025Updated 10 months ago
- The Family of Diffusion Protein Language Models (DPLM)☆336Jul 25, 2025Updated 10 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆257Mar 26, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated 3 months ago
- Diffusion-based all-atom protein generative model.☆237Aug 27, 2025Updated 9 months ago
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- ☆31Dec 12, 2024Updated last year
- ☆215Sep 24, 2024Updated last year
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆127May 27, 2025Updated last year
- Public Release of ProGen3 family of Models☆111Jul 21, 2025Updated 10 months ago
- ☆32Feb 5, 2025Updated last year
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆38Nov 7, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Fast protein backbone generation with SE(3) flow matching.☆326Jul 19, 2024Updated last year
- A conditionally adapted protein language model for the generation of enzymes☆24Nov 26, 2024Updated last year
- ☆113Jun 5, 2026Updated last week
- ☆139Jun 3, 2025Updated last year
- ☆22Nov 6, 2024Updated last year
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated last year
- Protein Design with Guided Discrete Diffusion☆143Feb 21, 2024Updated 2 years ago
- The official implementation of the NeurIPS'23 paper ProteinInvBench: Benchmarking Protein Design on Diverse Tasks, Models, and Metrics☆202Sep 18, 2024Updated last year
- Implementation for SE(3) diffusion model with application to protein backbone generation☆423Jul 3, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Implementation of Evolutionary and Metropolis Hastings Monte Carlo for text based (e.g. nucleotide/peptide) sequences☆13Mar 7, 2024Updated 2 years ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆332Oct 28, 2024Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆90Jun 23, 2024Updated last year
- ☆81Jun 29, 2025Updated 11 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆83Oct 24, 2025Updated 7 months ago
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆193Jun 24, 2024Updated last year
- Official repository for discrete Walk-Jump Sampling (dWJS)☆57Dec 17, 2023Updated 2 years ago
- Machine learning-driven antibody design☆63Jul 5, 2023Updated 2 years ago
- Lbster: Language models for Biological Sequence Transformation and Evolutionary Representation☆163Updated this week
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆139Aug 8, 2024Updated last year
- Official repository for the ProteinGym benchmarks☆435Mar 25, 2026Updated 2 months ago
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆291Dec 10, 2024Updated last year
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆153Apr 16, 2025Updated last year
- VenusFSFP: Few-Shot Protein Fitness Prediction☆116Nov 18, 2025Updated 7 months ago
- ☆74Feb 13, 2026Updated 4 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆69May 28, 2026Updated 3 weeks ago