Alternatives and similar repositories for protein-dpo

Users that are interested in protein-dpo are comparing it to the libraries listed below

• OATML-Markslab / ProteinNPT
  Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"
  ☆116Updated 4 months ago
• amyxlu / plaid
  All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins
  ☆103Updated 2 months ago
• uci-cbcl / esm-efficient
  Efficient implementatin of ESM family.
  ☆59Updated 6 months ago
• alexechu / protpardelle
  ☆65Updated last year
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆82Updated 2 months ago
• levinthal / Pallatom
  ☆106Updated 2 months ago
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆39Updated last year
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆115Updated last month
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated last year
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆65Updated last year
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆92Updated 8 months ago
• blt2114 / MotifBench
  A standardized protein design benchmark for motif-scaffolding problems
  ☆65Updated 2 weeks ago
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆80Updated last year
• Profluent-AI / progen3
  Public Release of ProGen3 family of Models
  ☆79Updated 3 weeks ago
• A-Alpha-Bio / alphabind
  AlphaBind code + model accompanying pre-print
  ☆70Updated 2 weeks ago
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆132Updated 3 months ago
• zhanghaicang / carbonmatrix_public
  ☆115Updated last month
• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆49Updated 8 months ago
• OpenProteinAI / PoET
  Inference code for PoET: A generative model of protein families as sequences-of-sequences
  ☆78Updated last year
• Graylab / FLAb
  Fitness landscapes for antibodies
  ☆74Updated 6 months ago
• luo-group / ConFit
  Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape
  ☆31Updated 11 months ago
• TencentAI4S / IgGM
  [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design
  ☆75Updated 3 months ago
• DeepGraphLearning / S3F
  Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
  ☆42Updated 8 months ago
• chloechsu / combining-evolutionary-and-assay-labelled-data
  ☆68Updated 3 years ago
• yehlincho / BoltzDesign1
  ☆186Updated 2 weeks ago
• chandar-lab / AMPLIFY
  ☆105Updated 3 weeks ago
• seanrjohnson / protein_scoring
  Generating and scoring novel enzyme sequences with a variety of models and metrics
  ☆70Updated last month
• ai4protein / VenusREM
  🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)
  ☆87Updated 3 weeks ago
• J-SNACKKB / FLIP
  A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design
  ☆102Updated 10 months ago
• hugohrban / ProGen2-finetuning
  Finetuning ProGen2 protein language model for generation of protein sequences from selected protein families.
  ☆68Updated 6 months ago