evo-design / protein-dpoLinks
Aligning protein generative models with experimental fitness
☆107Updated 2 months ago
Alternatives and similar repositories for protein-dpo
Users that are interested in protein-dpo are comparing it to the libraries listed below
Sorting:
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆119Updated 6 months ago
- ☆65Updated 2 years ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆114Updated 4 months ago
- ☆118Updated 4 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆121Updated 3 months ago
- Efficient implementatin of ESM family.☆74Updated last month
- ☆116Updated 3 months ago
- Code for humanization of antibody and nanobody☆56Updated last month
- Official repository of EnzymeFlow☆94Updated 10 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆81Updated last year
- This repository implements Gibbs sampling with Graph-based Smoothing☆39Updated last year
- A standardized protein design benchmark for motif-scaffolding problems☆68Updated 2 months ago
- AlphaBind code + model accompanying pre-print☆80Updated 2 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆103Updated 3 weeks ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆86Updated 4 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated last year
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆80Updated last year
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆138Updated 5 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆44Updated 10 months ago
- Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.☆125Updated this week
- ☆101Updated last week
- ☆70Updated 3 years ago
- Public Release of ProGen3 family of Models☆79Updated 2 months ago
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- Fitness landscapes for antibodies☆85Updated last month
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆71Updated 3 months ago
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆32Updated 2 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆106Updated last year
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆107Updated last month
- Official Implementation of IgGM☆135Updated 2 weeks ago