evo-design / protein-dpoLinks
Aligning protein generative models with experimental fitness
☆111Updated last month
Alternatives and similar repositories for protein-dpo
Users that are interested in protein-dpo are comparing it to the libraries listed below
Sorting:
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆119Updated 8 months ago
- ☆65Updated 2 years ago
- Efficient implementatin of ESM family.☆76Updated 2 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆115Updated 5 months ago
- ☆115Updated this week
- ☆126Updated 5 months ago
- Code for humanization of antibody and nanobody☆63Updated 2 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆126Updated last week
- Official repository of EnzymeFlow☆95Updated 11 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆144Updated 7 months ago
- ☆117Updated 5 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆39Updated last year
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆71Updated 5 months ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆111Updated 3 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆84Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- Fitness landscapes for antibodies☆90Updated 2 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆46Updated 11 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆88Updated 5 months ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆40Updated 3 months ago
- AlphaBind code + model accompanying pre-print☆85Updated 3 months ago
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- A standardized protein design benchmark for motif-scaffolding problems☆70Updated 3 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆84Updated last year
- Public Release of ProGen3 family of Models☆87Updated 4 months ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆105Updated 3 weeks ago
- Contrastive fitness learning: Reprogramming protein language models for low-N learning of protein fitness landscape☆33Updated last year
- Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.☆158Updated 3 weeks ago
- ☆71Updated 4 years ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆80Updated last year