Alternatives and similar repositories for genie2

Users that are interested in genie2 are comparing it to the libraries listed below

• NVIDIA-Digital-Bio / proteina
  Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…
  ☆171Updated last week
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆172Updated 3 months ago
• aqlaboratory / genie
  De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds
  ☆180Updated last year
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆216Updated 10 months ago
• ProteinDesignLab / protpardelle
  Diffusion-based all-atom protein generative model.
  ☆198Updated 3 months ago
• ketatam / DiffDock-PP
  Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
  ☆206Updated last year
• pinder-org / pinder
  PINDER: The Protein INteraction Dataset and Evaluation Resource
  ☆123Updated 6 months ago
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆122Updated last month
• levinthal / Pallatom
  ☆94Updated this week
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆154Updated last year
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆92Updated 6 months ago
• colbyford / PyMOLfold
  Plugin for folding sequences directly in PyMOL
  ☆98Updated 3 months ago
• uw-ipd / RoseTTAFold2
  ☆194Updated last month
• THUNLP-MT / dyMEAN
  This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"
  ☆109Updated 3 months ago
• LBM-EPFL / PeSTo
  Geometric deep learning method to predict protein binding interfaces from a protein structure.
  ☆134Updated last year
• ikalvet / heme_binder_diffusion
  ☆128Updated 7 months ago
• bjing2016 / EigenFold
  EigenFold: Generative Protein Structure Prediction with Diffusion Models
  ☆173Updated 2 years ago
• Graylab / IgLM
  Generative Language Modeling for Antibody Design
  ☆150Updated 8 months ago
• patrickbryant1 / EvoBind
  In silico directed evolution of peptide binders with AlphaFold
  ☆182Updated last week
• zrqiao / NeuralPLexer
  NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
  ☆292Updated last year
• oxpig / AntiFold
  Improved antibody structure-based design using inverse folding
  ☆120Updated 3 weeks ago
• TencentAI4S / IgGM
  [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design
  ☆74Updated 3 weeks ago
• LPDI-EPFL / masif-neosurf
  MaSIF-neosurf: surface-based protein design for ternary complexes.
  ☆123Updated last week
• zhanghaicang / carbonmatrix_public
  ☆113Updated last month
• Graylab / GeoDock
  Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.
  ☆95Updated 10 months ago
• dakpinaroglu / Frame2seq
  Structure-conditioned masked language modeling for protein sequence design
  ☆62Updated last year
• luost26 / diffab
  ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
  ☆322Updated last year
• jproney / AF2Rank
  ☆108Updated 2 years ago
• plinder-org / plinder
  Protein Ligand INteraction Dataset and Evaluation Resource
  ☆223Updated last month
• anton-bushuiev / PPIRef
  Dataset and package for working with protein-protein interactions in 3D
  ☆92Updated last month