aqlaboratory / genie2Links
Protein structure diffusion model for unconditional protein generation and motif scaffolding
☆166Updated last year
Alternatives and similar repositories for genie2
Users that are interested in genie2 are comparing it to the libraries listed below
Sorting:
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆199Updated last month
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆186Updated 3 weeks ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆134Updated 4 months ago
- ☆109Updated 2 months ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆214Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆180Updated last year
- Diffusion-based all-atom protein generative model.☆214Updated 6 months ago
- Protein-ligand structure prediction☆226Updated last month
- A generalized computational framework for biomolecular modeling.☆198Updated this week
- ☆198Updated 2 weeks ago
- Official repository of EnzymeFlow☆93Updated 8 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆67Updated last month
- ☆198Updated 4 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆110Updated 3 months ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆150Updated last month
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆118Updated 6 months ago
- Plugin for folding sequences directly in PyMOL☆104Updated 3 weeks ago
- Improved antibody structure-based design using inverse folding☆132Updated last week
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆131Updated 9 months ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆177Updated 2 years ago
- Official Implementation of IgGM☆78Updated this week
- Official repository for DiffPepBuilder and DiffPepDock tools☆99Updated this week
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆142Updated last year
- Dataset and package for working with protein-protein interactions in 3D☆95Updated 4 months ago
- Comprehensive benchmarking of protein-ligand structure prediction methods. (ICML 2024 AI4Science)☆167Updated 2 weeks ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆90Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆117Updated 2 months ago
- Public Release of ProGen3 family of Models☆81Updated last month
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- Central repository for biomolecular foundation models with shared trainers and pipeline components☆118Updated this week