Protein structure diffusion model for unconditional protein generation and motif scaffolding
☆193Jun 24, 2024Updated 2 years ago
Alternatives and similar repositories for genie2
Users that are interested in genie2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆90Jun 23, 2024Updated 2 years ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆142Nov 11, 2025Updated 7 months ago
- Diffusion-based all-atom protein generative model.☆237Aug 27, 2025Updated 10 months ago
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆530Mar 22, 2026Updated 3 months ago
- Fast protein backbone generation with SE(3) flow matching.☆326Jul 19, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆188Apr 21, 2024Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- Efficient manipulation of protein structures in Python☆68Jun 16, 2026Updated 2 weeks ago
- ☆142Jun 3, 2025Updated last year
- Implementation for SE(3) diffusion model with application to protein backbone generation☆423Jul 3, 2023Updated 3 years ago
- Public RFDiffusionAA repo☆483Jul 9, 2024Updated last year
- ☆231Mar 2, 2024Updated 2 years ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆267Jul 24, 2025Updated 11 months ago
- A generative model for programmable protein design☆822Apr 11, 2024Updated 2 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆212Apr 21, 2025Updated last year
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆333Oct 28, 2024Updated last year
- Protein representation and design under a single training scheme☆24May 17, 2026Updated last month
- A standardized protein design benchmark for motif-scaffolding problems☆81Jun 22, 2026Updated last week
- Official repository for DiffPepBuilder and DiffPepDock tools☆127Oct 24, 2025Updated 8 months ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 7 months ago
- ☆47Sep 16, 2024Updated last year
- ☆118Jan 3, 2026Updated 6 months ago
- Compressing protein structures effectively with torsion angles☆193Feb 10, 2026Updated 4 months ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆59May 6, 2024Updated 2 years ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆69May 28, 2026Updated last month
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆291Dec 10, 2024Updated last year
- Official code release for Ambient Protein Diffusion☆35Aug 30, 2025Updated 10 months ago
- RoseTTAFold2 protein/nucleic acid complex prediction☆378Jun 3, 2024Updated 2 years ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆155Apr 16, 2025Updated last year
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆54Jun 22, 2026Updated last week
- The Family of Diffusion Protein Language Models (DPLM)☆338Jul 25, 2025Updated 11 months ago
- In-silico design pipeline for evaluating protein structure diffusion models.☆31Jun 25, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- User friendly and accurate binder design pipeline☆1,145May 11, 2026Updated last month
- Aligning protein generative models with experimental fitness☆124Mar 12, 2026Updated 3 months ago
- ☆810May 18, 2026Updated last month
- ProteinReDiff: Complex-based ligand-binding proteins redesign by equivariant diffusion-based generative models☆39Nov 25, 2024Updated last year
- ☆593Feb 6, 2025Updated last year
- Official repository of EnzymeFlow☆102Dec 7, 2024Updated last year
- Making Protein Design accessible to all via Google Colab!☆921Apr 6, 2026Updated 2 months ago