aqlaboratory / genie2
Protein structure diffusion model for unconditional protein generation and motif scaffolding
☆140Updated 8 months ago
Alternatives and similar repositories for genie2:
Users that are interested in genie2 are comparing it to the libraries listed below
- Diffusion-based all-atom protein generative model.☆182Updated 2 weeks ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆148Updated 2 weeks ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆109Updated 2 months ago
- Generative Language Modeling for Antibody Design☆140Updated 5 months ago
- ☆86Updated 4 months ago
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆103Updated 3 months ago
- ☆189Updated 3 months ago
- ☆112Updated 4 months ago
- Masif seed paper repository☆145Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆177Updated 10 months ago
- Protein-ligand structure prediction☆210Updated 7 months ago
- Official repository of EnzymeFlow☆79Updated 2 months ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆169Updated last year
- Improved antibody structure-based design using inverse folding☆92Updated last month
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆68Updated 3 weeks ago
- Official repository for Target-Specific De Novo Peptide Binder Design with DiffPepBuilder☆78Updated this week
- In silico directed evolution of peptide binders with AlphaFold☆147Updated last month
- ☆286Updated 3 weeks ago
- Plugin for folding sequences directly in PyMOL☆85Updated 3 weeks ago
- ☆109Updated 4 months ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆197Updated last year
- Predict the structure of immune receptor proteins☆127Updated last month
- repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model☆225Updated 9 months ago
- PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets☆168Updated last month
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆120Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆61Updated last year
- SaprotHub: Making Protein Modeling Accessible to All Biologists☆99Updated this week
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆113Updated 2 weeks ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆98Updated this week