aqlaboratory / genie2Links
Protein structure diffusion model for unconditional protein generation and motif scaffolding
☆186Updated last year
Alternatives and similar repositories for genie2
Users that are interested in genie2 are comparing it to the libraries listed below
Sorting:
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆184Updated last year
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆149Updated 9 months ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆234Updated 6 months ago
- ☆133Updated 8 months ago
- Diffusion-based all-atom protein generative model.☆230Updated 5 months ago
- composite-objective protein design☆243Updated this week
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆227Updated 2 years ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆224Updated 6 months ago
- A generalized computational framework for biomolecular modeling.☆396Updated last month
- Protein-ligand structure prediction☆238Updated 6 months ago
- Official repository of EnzymeFlow☆98Updated last year
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆120Updated 8 months ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆180Updated 2 years ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆89Updated 2 years ago
- Generative Language Modeling for Antibody Design☆180Updated last year
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆148Updated last year
- Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.☆185Updated this week
- ☆116Updated 3 years ago
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆125Updated 11 months ago
- ☆236Updated last week
- ☆208Updated 9 months ago
- Official repository of "ODesign: A World Model for Biomolecular Interaction Design"☆241Updated last week
- Comprehensive benchmarking of protein-ligand structure prediction methods. (Nature Machine Intelligence)☆205Updated last month
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆163Updated 6 months ago
- A geometric flow matching model for generative protein-ligand docking and affinity prediction. (ISMB 2025)☆126Updated 5 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆133Updated 3 months ago
- ☆146Updated 6 months ago
- Aligning protein generative models with experimental fitness☆117Updated 3 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆73Updated 2 weeks ago
- Improved antibody structure-based design using inverse folding☆152Updated 2 months ago