Alternatives and similar repositories for chroma

Users that are interested in chroma are comparing it to the libraries listed below

• kyegomez / Open-AF3
  Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
  ☆794Updated last week
• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆778Updated this week
• baker-laboratory / RoseTTAFold-All-Atom
  ☆745Updated 3 months ago
• gcorso / DiffDock
  Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
  ☆1,306Updated 3 months ago
• microsoft / evodiff
  Generation of protein sequences and evolutionary alignments via discrete diffusion models
  ☆633Updated 2 months ago
• microsoft / foldingdiff
  Diffusion models of protein structure; trigonometry and attention are all you need!
  ☆552Updated last year
• HeliXonProtein / OmegaFold
  OmegaFold Release Code
  ☆596Updated 2 years ago
• microsoft / bioemu
  Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning
  ☆613Updated last week
• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆640Updated 2 weeks ago
• baker-laboratory / rf_diffusion_all_atom
  Public RFDiffusionAA repo
  ☆426Updated last year
• dauparas / ProteinMPNN
  Code for the ProteinMPNN paper
  ☆1,413Updated last year
• RosettaCommons / PyRosetta.notebooks
  Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
  ☆600Updated last year
• steineggerlab / foldseek
  Foldseek enables fast and sensitive comparisons of large structure sets.
  ☆1,042Updated this week
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆365Updated last year
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆371Updated last year
• YoshitakaMo / localcolabfold
  ColabFold on your local PC
  ☆741Updated 2 months ago
• bjing2016 / alphaflow
  AlphaFold Meets Flow Matching for Generating Protein Ensembles
  ☆472Updated 7 months ago
• nrbennet / dl_binder_design
  ☆342Updated last year
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆317Updated 10 months ago
• salesforce / progen
  Official release of the ProGen models
  ☆668Updated 2 years ago
• LPDI-EPFL / masif
  MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
  ☆679Updated last year
• lightdock / lightdock
  Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
  ☆353Updated 2 months ago
• dptech-corp / Uni-Fold
  An open-source platform for developing protein models beyond AlphaFold.
  ☆398Updated last year
• dauparas / LigandMPNN
  ☆426Updated 6 months ago
• gnina / gnina
  A deep learning framework for molecular docking
  ☆762Updated 2 weeks ago
• HannesStark / EquiBind
  EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
  ☆513Updated 6 months ago
• OATML-Markslab / ProteinGym
  Official repository for the ProteinGym benchmarks
  ☆340Updated last month
• biotite-dev / biotite
  A comprehensive library for computational molecular biology
  ☆849Updated this week
• Graylab / DL4Proteins-notebooks
  Colab Notebooks covering deep learning tools for biomolecular structure prediction and design
  ☆415Updated 4 months ago
• adaptyvbio / ProteinFlow
  Versatile computational pipeline for processing protein structure data for deep learning applications.
  ☆263Updated last year