Alternatives and similar repositories for chroma:

Users that are interested in chroma are comparing it to the libraries listed below

• sokrypton / ColabDesign
  Making Protein Design accessible to all via Google Colab!
  ☆725Updated last month
• dauparas / ProteinMPNN
  Code for the ProteinMPNN paper
  ☆1,259Updated 8 months ago
• baker-laboratory / RoseTTAFold-All-Atom
  ☆709Updated 9 months ago
• Graylab / IgFold
  Fast, accurate antibody structure prediction from deep learning on massive set of natural antibodies
  ☆357Updated last year
• martinpacesa / BindCraft
  User friendly and accurate binder design pipeline
  ☆517Updated last month
• gcorso / DiffDock
  Implementation of DiffDock: Diffusion Steps, Twists, and Turns for Molecular Docking
  ☆1,238Updated last week
• uw-ipd / RoseTTAFold2NA
  RoseTTAFold2 protein/nucleic acid complex prediction
  ☆358Updated 11 months ago
• baker-laboratory / rf_diffusion_all_atom
  Public RFDiffusionAA repo
  ☆391Updated 10 months ago
• HeliXonProtein / OmegaFold
  OmegaFold Release Code
  ☆584Updated 2 years ago
• microsoft / foldingdiff
  Diffusion models of protein structure; trigonometry and attention are all you need!
  ☆539Updated last year
• bjing2016 / alphaflow
  AlphaFold Meets Flow Matching for Generating Protein Ensembles
  ☆438Updated 4 months ago
• YoshitakaMo / localcolabfold
  ColabFold on your local PC
  ☆695Updated 2 weeks ago
• kyegomez / AlphaFold3
  Implementation of Alpha Fold 3 from the paper: "Accurate structure prediction of biomolecular interactions with AlphaFold3" in PyTorch
  ☆784Updated 2 weeks ago
• microsoft / evodiff
  Generation of protein sequences and evolutionary alignments via discrete diffusion models
  ☆590Updated 3 months ago
• RosettaCommons / PyRosetta.notebooks
  Jupyter Notebooks for learning the PyRosetta platform for biomolecular structure prediction and design
  ☆564Updated 8 months ago
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆310Updated 6 months ago
• nrbennet / dl_binder_design
  ☆308Updated 9 months ago
• dauparas / LigandMPNN
  ☆368Updated 3 months ago
• lightdock / lightdock
  Protein-protein, protein-peptide and protein-DNA docking framework based on the GSO algorithm
  ☆334Updated last week
• steineggerlab / foldseek
  Foldseek enables fast and sensitive comparisons of large structure sets.
  ☆970Updated last week
• adaptyvbio / ProteinFlow
  Versatile computational pipeline for processing protein structure data for deep learning applications.
  ☆256Updated last year
• Peldom / papers_for_protein_design_using_DL
  List of papers about Proteins Design using Deep Learning
  ☆1,659Updated last week
• LPDI-EPFL / masif
  MaSIF- Molecular surface interaction fingerprints. Geometric deep learning to decipher patterns in molecular surfaces.
  ☆653Updated 10 months ago
• microsoft / protein-sequence-models
  ☆247Updated 9 months ago
• biolists / folding_tools
  A collection of *fold* tools
  ☆293Updated 7 months ago
• dptech-corp / Uni-Fold
  An open-source platform for developing protein models beyond AlphaFold.
  ☆392Updated 10 months ago
• HannesStark / EquiBind
  EquiBind: geometric deep learning for fast predictions of the 3D structure in which a small molecule binds to a protein
  ☆506Updated 2 months ago
• MolecularAI / REINVENT4
  AI molecular design tool for de novo design, scaffold hopping, R-group replacement, linker design and molecule optimization.
  ☆477Updated last month
• luost26 / diffab
  ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
  ☆318Updated last year
• OATML-Markslab / ProteinGym
  Official repository for the ProteinGym benchmarks
  ☆300Updated last week