Official code release for Ambient Protein Diffusion
☆35Aug 30, 2025Updated last year
Alternatives and similar repositories for ambient-proteins
Users that are interested in ambient-proteins are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆42Mar 30, 2025Updated last year
- ☆24Updated this week
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆195Jun 24, 2024Updated 2 years ago
- Potts model-based protein sequence design☆116Jul 1, 2026Updated 2 months ago
- Biomolecular co-folding, binder filtering, and nanobody design☆92Jun 28, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Genie 3 is a fast, all-atom SE(3)-equivariant diffusion model for protein design. It achieves state-of-the-art performance on uncondition…☆135May 10, 2026Updated 4 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆150Nov 11, 2025Updated 10 months ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆275Jul 24, 2025Updated last year
- Protein representation and design under a single training scheme☆25May 17, 2026Updated 4 months ago
- Official repository for the Protriever paper☆17Jun 5, 2025Updated last year
- protein structure generation with sparse all-atom denoising models☆65Jul 7, 2026Updated 2 months ago
- Metrics to evaluate distributional coverage of generative models of protein structures.☆21Aug 13, 2025Updated last year
- SwitchCraft: A Programmatic Framework for Designing State-Switching Proteins☆92Jun 1, 2026Updated 3 months ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆84May 1, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Compressing protein structures effectively with torsion angles☆197Sep 7, 2026Updated 2 weeks ago
- A partially latent flow matching model for the joint generation of a protein’s amino acid sequence and full atomistic structure, includin…☆311Sep 23, 2025Updated last year
- A generalized computational framework for biomolecular modeling.☆449Aug 20, 2026Updated last month
- Official implementation of NeurIPS'24 paper "Bridge-IF: Learning Inverse Protein Folding with Markov Bridges"☆18Mar 16, 2025Updated last year
- ☆188Jul 24, 2026Updated 2 months ago
- ☆24Aug 6, 2026Updated last month
- Extension of ThermoMPNN for double mutant predictions☆66Mar 23, 2026Updated 6 months ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- Metal and Water prediction☆16Feb 5, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆259Updated this week
- Code and model weights for PoET-2, a retrieval-augmented multimodel protein language model for protein sequence generation and representa…☆30Aug 20, 2025Updated last year
- MiniFold: Simple, Fast and Accurate Protein Structure Prediction☆96Jul 10, 2025Updated last year
- Official repository for DiffPepBuilder and DiffPepDock tools☆134Oct 24, 2025Updated 11 months ago
- [NeurIPS 2025 spotlight] Efficient factorized variant of the IPA module.☆47Nov 14, 2025Updated 10 months ago
- ☆15Apr 17, 2025Updated last year
- HBDesigner is an algorithm that designs highly-connected hydrogen bonding networks that fit the requested design constraints onto an inpu…☆20Aug 31, 2026Updated 3 weeks ago
- Profluent-E1 family of Protein Encoder Models☆115Mar 11, 2026Updated 6 months ago
- RAG-ESM is a retrieval-augmented framework that allows to condition pretrained ESM2 protein language models on homologous sequences☆27Aug 21, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Neural Iterative Selection-Expansion using LigandMPNN/LASErMPNN and Boltz-2x☆72Aug 11, 2026Updated last month
- ☆17May 18, 2026Updated 4 months ago
- [ICML 2024] Floating Anchor Diffusion Model for Multi-motif Scaffolding☆35Aug 23, 2024Updated 2 years ago
- ☆146Jun 3, 2025Updated last year
- ☆147Jun 16, 2026Updated 3 months ago
- ICLR 2026☆23Nov 20, 2025Updated 10 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆126May 27, 2025Updated last year