Official code release for Ambient Protein Diffusion
☆33Aug 30, 2025Updated 7 months ago
Alternatives and similar repositories for ambient-proteins
Users that are interested in ambient-proteins are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆39Mar 30, 2025Updated last year
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆190Jun 24, 2024Updated last year
- A protein structure dataset that combines 3D atomic coordinates with biophysical and evolutionary properties for every atom in every "cle…☆39Jul 25, 2024Updated last year
- Code for AlphaFold Distillation for Protein Design☆27Sep 18, 2025Updated 7 months ago
- Enzyme datasets used to benchmark enzyme-substrate promiscuity models☆43Jun 28, 2021Updated 4 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- random colab notebooks for biology☆26Aug 23, 2025Updated 7 months ago
- ☆16Mar 28, 2025Updated last year
- Tutorial files☆12Aug 7, 2024Updated last year
- Python package for P2 (Path Planning), a masked diffusion model sampling method for sequence generation (protein, text, etc.).☆23Aug 19, 2025Updated 7 months ago
- Python package for handling ModelCIF mmCIF and BinaryCIF files☆13Updated this week
- Inpainting protein sequence and structure☆12Nov 10, 2023Updated 2 years ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆76Feb 24, 2025Updated last year
- protein backbone refinement☆15Sep 12, 2024Updated last year
- Fast protein structure searching or your money back☆118Updated this week
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- Building more accurate protein structures from backbone torsion angles☆15Mar 21, 2025Updated last year
- Geometric Algebra Flow Matching (GAFL) for Protein Backbone Generation☆19Oct 31, 2025Updated 5 months ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆251Jul 24, 2025Updated 8 months ago
- ☆16Dec 10, 2024Updated last year
- ☆18Jun 13, 2025Updated 10 months ago
- Protein Origami via Genetic Fusions☆18Sep 19, 2022Updated 3 years ago
- Extract ligand binding sites from PDB. Match the binding sites to de novo scaffolds.☆12Dec 29, 2020Updated 5 years ago
- Deep learning + physical modeling for 3D protein metal ion binding prediction☆13Feb 24, 2025Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆33Feb 5, 2025Updated last year
- ☆11Aug 5, 2020Updated 5 years ago
- ☆13Apr 1, 2026Updated 2 weeks ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- ☆18Mar 13, 2024Updated 2 years ago
- Code for the paper "OneProt: Towards Multi-Modal Protein Foundation Models"☆21Oct 31, 2025Updated 5 months ago
- Metrics for our protein design competitions.☆35Nov 1, 2024Updated last year
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Jul 25, 2023Updated 2 years ago
- Protein representation and design under a single training scheme☆24Mar 3, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Some scoring functions for predicting the effects of mutations on protein sequences using ESM-2☆11Dec 10, 2023Updated 2 years ago
- Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"☆47Aug 5, 2025Updated 8 months ago
- Protein structure datasets for machine learning.☆115Apr 22, 2025Updated 11 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆138Nov 11, 2025Updated 5 months ago
- Using Rotamer Interaction Fields from RIFGen/Dock in python☆18May 2, 2021Updated 4 years ago
- [NeurIPS 2025 spotlight] Efficient factorized variant of the IPA module.☆46Nov 14, 2025Updated 5 months ago
- A web app to convert a PyMOL PSE file or PDB file to a easy to implement NGL.js view that can be implemented easily on any site☆29Jan 31, 2023Updated 3 years ago