Alternatives and similar repositories for protpardelle

Users that are interested in protpardelle are comparing it to the libraries listed below

• ketatam / DiffDock-PP
  Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)
  ☆219Updated last year
• Kuhlman-Lab / ThermoMPNN
  GNN trained to predict changes in thermodynamic stability for protein point mutants
  ☆197Updated 2 months ago
• plinder-org / plinder
  Protein Ligand INteraction Dataset and Evaluation Resource
  ☆254Updated 4 months ago
• RosettaCommons / atomworks
  A generalized computational framework for biomolecular modeling.
  ☆307Updated last week
• pinder-org / pinder
  PINDER: The Protein INteraction Dataset and Evaluation Resource
  ☆136Updated 11 months ago
• RosettaCommons / RFdiffusion2
  Inference code for RFdiffusion2
  ☆308Updated this week
• patrickbryant1 / Umol
  Protein-ligand structure prediction
  ☆229Updated 2 months ago
• zaixizhang / PocketGen
  PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets
  ☆200Updated 6 months ago
• uw-ipd / RoseTTAFold2
  ☆199Updated 6 months ago
• RosettaCommons / modelforge
  Central repository for biomolecular foundation models with shared trainers and pipeline components
  ☆180Updated last month
• luwei0917 / DynamicBind
  repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model
  ☆267Updated last year
• BioinfoMachineLearning / PoseBench
  Comprehensive benchmarking of protein-ligand structure prediction methods. (ICML 2024 AI4Science)
  ☆170Updated 2 months ago
• baker-laboratory / PLACER
  PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
  ☆173Updated 7 months ago
• amyxlu / cheap-proteins
  Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…
  ☆142Updated 6 months ago
• NVIDIA-Digital-Bio / proteina
  Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…
  ☆213Updated 3 months ago
• yehlincho / BoltzDesign1
  ☆216Updated 2 months ago
• zrqiao / NeuralPLexer
  NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model
  ☆308Updated 2 weeks ago
• wallnerlab / DockQ
  DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models
  ☆331Updated 2 months ago
• LPDI-EPFL / masif_seed
  Masif seed paper repository
  ☆160Updated last month
• levinthal / Pallatom
  ☆121Updated 4 months ago
• luost26 / diffab
  ✌🏻 Antigen-Specific Antibody Design and Optimization with Diffusion-Based Generative Models for Protein Structures (NeurIPS 2022)
  ☆347Updated 2 years ago
• a-r-j / ProteinWorkshop
  Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …
  ☆253Updated 5 months ago
• ikalvet / heme_binder_diffusion
  ☆139Updated 3 months ago
• RosettaCommons / RFDesign
  Protein hallucination and inpainting with RoseTTAFold
  ☆270Updated 2 years ago
• hefeda / design_tools
  A compilation of deep learning methods for protein design
  ☆97Updated 2 years ago
• RosettaCommons / RFantibody
  ☆291Updated 3 weeks ago
• BytedProtein / ByProt
  ☆204Updated last year
• aqlaboratory / genie
  De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds
  ☆182Updated last year
• RosettaCommons / protein_generator
  Joint sequence and structure generation with RoseTTAFold sequence space diffusion
  ☆322Updated 11 months ago
• jertubiana / ScanNet
  ☆133Updated 4 months ago