ProteinDesignLab / protpardelle
Diffusion-based all-atom protein generative model.
☆180Updated this week
Alternatives and similar repositories for protpardelle:
Users that are interested in protpardelle are comparing it to the libraries listed below
- Protein-ligand structure prediction☆210Updated 6 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆143Updated last week
- Protein Ligand INteraction Dataset and Evaluation Resource☆204Updated this week
- repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model☆225Updated 9 months ago
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆100Updated 3 months ago
- PocketGen (Nature Machine Intelligence 24): Generating Full-Atom Ligand-Binding Protein Pockets☆168Updated last month
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆197Updated last year
- ☆108Updated 4 months ago
- Plausibility checks for generated molecule poses.☆254Updated 3 weeks ago
- ☆278Updated 2 weeks ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆108Updated last month
- ☆185Updated 3 months ago
- Protein hallucination and inpainting with RoseTTAFold☆251Updated last year
- ☆84Updated 3 months ago
- ☆107Updated 3 months ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆247Updated 3 weeks ago
- ☆172Updated 4 months ago
- Predict the structure of immune receptor proteins☆126Updated 3 weeks ago
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆279Updated 10 months ago
- Comprehensive benchmarking of protein-ligand structure prediction methods (ICML 2024 AI4Science)☆128Updated this week
- ☆119Updated last year
- A compilation of deep learning methods for protein design☆96Updated 2 years ago
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆120Updated last year
- Masif seed paper repository☆143Updated last year
- ☆81Updated 4 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆74Updated 7 months ago
- In silico directed evolution of peptide binders with AlphaFold☆145Updated 3 weeks ago
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆145Updated 5 months ago
- Dataset and package for working with protein-protein interactions in 3D☆90Updated last week
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆301Updated 3 months ago