pinder-org / pinder
PINDER: The Protein INteraction Dataset and Evaluation Resource
☆106Updated 4 months ago
Alternatives and similar repositories for pinder:
Users that are interested in pinder are comparing it to the libraries listed below
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆102Updated last week
- Protein Ligand INteraction Dataset and Evaluation Resource☆209Updated last month
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆112Updated 2 months ago
- Protein-ligand structure prediction☆211Updated 7 months ago
- ☆83Updated 5 months ago
- ☆100Updated 2 years ago
- Official repository of EnzymeFlow☆81Updated 3 months ago
- Dataset and package for working with protein-protein interactions in 3D☆91Updated last month
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆47Updated 2 months ago
- Diffusion-based all-atom protein generative model.☆183Updated last month
- ☆87Updated 4 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆67Updated 4 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆88Updated 7 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆152Updated last month
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆199Updated last year
- ☆113Updated 5 months ago
- ☆66Updated last year
- repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model☆227Updated 10 months ago
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆97Updated 5 months ago
- ☆105Updated last year
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆120Updated 2 years ago
- Pose checks for 3D Structure-based Drug Design methods☆79Updated 4 months ago
- Diffusion model based protein-ligand flexible docking method☆101Updated 4 months ago
- Comprehensive benchmarking of protein-ligand structure prediction methods (ICML 2024 AI4Science)☆135Updated 2 weeks ago
- Improved antibody structure-based design using inverse folding☆97Updated 2 months ago
- Masif seed paper repository☆145Updated last year
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆149Updated 3 weeks ago
- A compilation of deep learning methods for protein design☆97Updated 2 years ago