PINDER: The Protein INteraction Dataset and Evaluation Resource
☆158Nov 15, 2024Updated last year
Alternatives and similar repositories for pinder
Users that are interested in pinder are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Protein Ligand INteraction Dataset and Evaluation Resource☆305Updated this week
- It's a package for evaluation of predicted poses, right?☆78Jul 13, 2026Updated last month
- Structure-conditioned masked language modeling for protein sequence design☆74Jan 31, 2024Updated 2 years ago
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆299Dec 10, 2024Updated last year
- A high performance drop-in replacement for Biotite's PDBFile.☆43Jun 21, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆194Jun 24, 2024Updated 2 years ago
- TMol☆85Updated this week
- Implementation for SE(3) diffusion model with application to protein backbone generation☆423Jul 3, 2023Updated 3 years ago
- Fast protein backbone generation with SE(3) flow matching.☆327Jul 19, 2024Updated 2 years ago
- Fast and accurate protein domain segmentation using Invariant Point Attention☆46May 22, 2025Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆146Nov 11, 2025Updated 9 months ago
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆539Mar 22, 2026Updated 4 months ago
- Chai-1, SOTA model for biomolecular structure prediction☆1,977Jun 30, 2026Updated last month
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆263Mar 26, 2026Updated 4 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆135May 19, 2026Updated 2 months ago
- A generative model for programmable protein design☆827Apr 11, 2024Updated 2 years ago
- Fast protein structure searching or your money back☆119Apr 13, 2026Updated 4 months ago
- A fully open source biomolecular structure prediction model based on AlphaFold3☆817Updated this week
- ☆232Mar 2, 2024Updated 2 years ago
- ☆121Dec 7, 2022Updated 3 years ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆189Apr 21, 2024Updated 2 years ago
- Dataset and package for working with protein-protein interactions in 3D☆108Apr 28, 2025Updated last year
- Resources for Generalisable Protein Complex Prediction☆20Oct 16, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆135Nov 19, 2025Updated 8 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆155Apr 16, 2025Updated last year
- ☆86May 18, 2026Updated 2 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆84Updated this week
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆167Mar 28, 2026Updated 4 months ago
- ☆815May 18, 2026Updated 2 months ago
- Template-based protein design with Raygun☆136Jul 30, 2026Updated 2 weeks ago
- ☆211Apr 21, 2025Updated last year
- ☆258Feb 12, 2026Updated 6 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆17Oct 30, 2023Updated 2 years ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆127May 27, 2025Updated last year
- In-silico design pipeline for evaluating protein structure diffusion models.☆31Jun 25, 2024Updated 2 years ago
- Aligning protein generative models with experimental fitness☆125Mar 12, 2026Updated 5 months ago
- Protein structure datasets for machine learning.☆115Apr 22, 2025Updated last year
- repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model☆302Dec 23, 2025Updated 7 months ago
- Code for designing binders to flexible peptides with AlphaFold2 Hallucination☆30Dec 21, 2023Updated 2 years ago