pinder-org / pinderLinks
PINDER: The Protein INteraction Dataset and Evaluation Resource
☆131Updated 8 months ago
Alternatives and similar repositories for pinder
Users that are interested in pinder are comparing it to the libraries listed below
Sorting:
- ☆184Updated last week
- Sidechain conditioning and modeling for full-atom protein sequence design☆114Updated last month
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆136Updated last month
- Dataset and package for working with protein-protein interactions in 3D☆94Updated 3 months ago
- Protein Ligand INteraction Dataset and Evaluation Resource☆240Updated last month
- Protein-ligand structure prediction☆222Updated last week
- A compilation of deep learning methods for protein design☆97Updated 2 years ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆131Updated 3 months ago
- A geometric flow matching model for generative protein-ligand docking and affinity prediction. (ISMB 2025)☆97Updated 3 months ago
- Masif seed paper repository☆156Updated 2 years ago
- ☆92Updated 9 months ago
- ☆105Updated 2 months ago
- ☆110Updated 2 years ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆94Updated last week
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆212Updated last year
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆159Updated last week
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆181Updated 5 months ago
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆139Updated last year
- Comprehensive benchmarking of protein-ligand structure prediction methods. (ICML 2024 AI4Science)☆161Updated last week
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆80Updated last year
- Diffusion model based protein-ligand flexible docking method☆108Updated 9 months ago
- ☆212Updated 10 months ago
- Flexible Protein-Protein Docking with a Multi-Track Iterative Transformer.☆98Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆82Updated last month
- Official repository of EnzymeFlow☆92Updated 8 months ago
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆146Updated 4 months ago
- ☆134Updated 3 weeks ago
- A simplified implementation of DSSP algorithm for PyTorch and NumPy☆90Updated last month
- A series of scripts that facilitate the prediction of protein structures in multiple conformations using AlphaFold2☆96Updated last year
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆103Updated 2 months ago