baker-laboratory / PLACERLinks
PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
☆146Updated 4 months ago
Alternatives and similar repositories for PLACER
Users that are interested in PLACER are comparing it to the libraries listed below
Sorting:
- ☆134Updated 2 weeks ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆181Updated 5 months ago
- A bunch of shell utilities for dealing the silent files☆65Updated 2 months ago
- Protein-ligand structure prediction☆222Updated this week
- ☆120Updated 2 years ago
- repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model☆261Updated last year
- In silico directed evolution of peptide binders with AlphaFold☆219Updated 2 weeks ago
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆131Updated 8 months ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆136Updated last month
- A compilation of deep learning methods for protein design☆97Updated 2 years ago
- ☆184Updated last week
- Sidechain conditioning and modeling for full-atom protein sequence design☆114Updated last month
- Protein Ligand INteraction Dataset and Evaluation Resource☆238Updated last month
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆139Updated last year
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆159Updated last week
- Python3 translation of AutoDockTools☆122Updated last year
- Code for ColabDock paper☆142Updated 3 months ago
- Predict the structure of immune receptor proteins☆148Updated 6 months ago
- ☆255Updated 3 months ago
- Official repo of the modular BioExcel version of HADDOCK☆172Updated this week
- Rifdock Library for Conformational Search☆160Updated last year
- Masif seed paper repository☆156Updated 2 years ago
- An accurate and trainable end-to-end protein-ligand docking framework☆101Updated 4 months ago
- ☆20Updated 6 months ago
- SurfDock is a Surface-Informed Diffusion Generative Model for Reliable and Accurate Protein-ligand Complex Prediction☆202Updated last month
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆303Updated last year
- ☆119Updated 11 months ago
- ☆68Updated 2 months ago
- ☆72Updated 5 months ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆94Updated last week