baker-laboratory / PLACERLinks
PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
☆157Updated 6 months ago
Alternatives and similar repositories for PLACER
Users that are interested in PLACER are comparing it to the libraries listed below
Sorting:
- ☆139Updated last month
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆189Updated last month
- Inference code for RFdiffusion2☆263Updated this week
- repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model☆263Updated last year
- ☆124Updated 3 years ago
- A bunch of shell utilities for dealing the silent files☆67Updated 3 months ago
- ☆205Updated last month
- Protein-ligand structure prediction☆226Updated last month
- In silico directed evolution of peptide binders with AlphaFold☆233Updated 2 weeks ago
- A compilation of deep learning methods for protein design☆97Updated 2 years ago
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆144Updated this week
- Rifdock Library for Conformational Search☆160Updated last year
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆133Updated 10 months ago
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆160Updated last month
- Sidechain conditioning and modeling for full-atom protein sequence design☆117Updated 2 months ago
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆320Updated last month
- Predict the structure of immune receptor proteins☆151Updated 7 months ago
- Official repo of the modular BioExcel version of HADDOCK☆187Updated this week
- Code for ColabDock paper☆146Updated 4 months ago
- An accurate and trainable end-to-end protein-ligand docking framework☆105Updated 5 months ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆100Updated 2 weeks ago
- Protein Ligand INteraction Dataset and Evaluation Resource☆245Updated 3 months ago
- ☆23Updated 7 months ago
- Scoring function for interprotein interactions in AlphaFold2 and AlphaFold3☆88Updated 5 months ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆217Updated last year
- Python3 translation of AutoDockTools☆127Updated last year
- SurfDock is a Surface-Informed Diffusion Generative Model for Reliable and Accurate Protein-ligand Complex Prediction☆205Updated 2 months ago
- ☆75Updated 7 months ago
- Masif seed paper repository☆157Updated 2 years ago
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆142Updated last year