PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
☆255Nov 5, 2025Updated 7 months ago
Alternatives and similar repositories for PLACER
Users that are interested in PLACER are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆69Apr 8, 2025Updated last year
- Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.☆27Mar 8, 2025Updated last year
- ☆581Feb 6, 2025Updated last year
- ☆809May 18, 2026Updated 3 weeks ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆140Nov 11, 2025Updated 7 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Inference code for RFdiffusion2☆426Apr 3, 2026Updated 2 months ago
- ☆150Jul 16, 2025Updated 10 months ago
- All-Atom (Including Hydrogen!) Ligand-Conditioned Protein Sequence Design & Sidechain Packing GNN☆29Updated this week
- Diffusion-based all-atom protein generative model.☆236Aug 27, 2025Updated 9 months ago
- Public RFDiffusionAA repo☆482Jul 9, 2024Updated last year
- Official repository of EnzymeFlow☆102Dec 7, 2024Updated last year
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆74Jul 2, 2025Updated 11 months ago
- ☆31Dec 12, 2024Updated last year
- ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.☆91Dec 3, 2025Updated 6 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆174Feb 6, 2026Updated 4 months ago
- A standardized protein design benchmark for motif-scaffolding problems☆80Jun 3, 2026Updated last week
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 7 months ago
- code for SeqDance/ESMDance, biophysics-informed protein language models☆60Jan 28, 2026Updated 4 months ago
- ☆82Mar 23, 2026Updated 2 months ago
- User friendly and accurate binder design pipeline☆1,123May 11, 2026Updated last month
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆64May 21, 2025Updated last year
- NeuralPLexer: State-specific protein-ligand complex structure prediction with a multi-scale deep generative model☆330Oct 6, 2025Updated 8 months ago
- Code for running RFdiffusion☆2,906Apr 24, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Official repository of GENzyme☆64Nov 29, 2024Updated last year
- Official repository for the Boltz biomolecular interaction models☆4,021May 29, 2026Updated 2 weeks ago
- The Rosetta Bio-macromolecule modeling package. Available through license with the University of Washington.☆445Updated this week
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆257Mar 26, 2026Updated 2 months ago
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆62Apr 6, 2026Updated 2 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆90Jun 23, 2024Updated last year
- Inference code for scalable emulation of protein equilibrium ensembles with generative deep learning☆832Updated this week
- ☆503Mar 5, 2026Updated 3 months ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆264Jul 24, 2025Updated 10 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆192Jun 24, 2024Updated last year
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆187Oct 7, 2025Updated 8 months ago
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆528Mar 22, 2026Updated 2 months ago
- Colab Notebooks covering deep learning tools for biomolecular structure prediction and design☆689Apr 17, 2026Updated last month
- repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model☆296Dec 23, 2025Updated 5 months ago
- Toward High-Accuracy Open-Source Biomolecular Structure Prediction.☆1,934May 6, 2026Updated last month
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆604Mar 8, 2026Updated 3 months ago