baker-laboratory / PLACERLinks
PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.
☆152Updated 5 months ago
Alternatives and similar repositories for PLACER
Users that are interested in PLACER are comparing it to the libraries listed below
Sorting:
- ☆137Updated last month
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆184Updated 2 weeks ago
- A bunch of shell utilities for dealing the silent files☆66Updated 3 months ago
- repo for DynamicBind: Predicting ligand-specific protein-ligand complex structure with a deep equivariant generative model☆263Updated last year
- ☆179Updated this week
- Protein-ligand structure prediction☆226Updated 3 weeks ago
- ☆124Updated 3 years ago
- ☆193Updated last week
- MaSIF-neosurf: surface-based protein design for ternary complexes.☆140Updated last week
- A compilation of deep learning methods for protein design☆97Updated 2 years ago
- In silico directed evolution of peptide binders with AlphaFold☆227Updated last month
- Sidechain conditioning and modeling for full-atom protein sequence design☆116Updated 2 months ago
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆131Updated 9 months ago
- An accurate and trainable end-to-end protein-ligand docking framework☆103Updated 5 months ago
- Diffusion-based all-atom protein generative model.☆214Updated 6 months ago
- Python3 translation of AutoDockTools☆125Updated last year
- Official repo of the modular BioExcel version of HADDOCK☆181Updated this week
- Code for ColabDock paper☆144Updated 3 months ago
- Predict the structure of immune receptor proteins☆150Updated 6 months ago
- Predict multiple protein conformations using sequence clustering and AlphaFold2.☆159Updated 3 weeks ago
- Masif seed paper repository☆157Updated 2 years ago
- ☆115Updated 2 months ago
- Protein Ligand INteraction Dataset and Evaluation Resource☆242Updated 2 months ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆98Updated last week
- DockQ is a single continuous quality measure for Protein, Nucleic Acids and Small Molecule Docking Models☆315Updated 2 weeks ago
- Geometric deep learning method to predict protein binding interfaces from a protein structure.☆141Updated last year
- SurfDock is a Surface-Informed Diffusion Generative Model for Reliable and Accurate Protein-ligand Complex Prediction☆205Updated last month
- ☆74Updated 6 months ago
- ☆263Updated 4 months ago
- Diffusion model based protein-ligand flexible docking method☆110Updated 9 months ago