jasonkyuyim / multiflow
☆143Updated last year
Alternatives and similar repositories for multiflow:
Users that are interested in multiflow are comparing it to the libraries listed below
- Fast protein backbone generation with SE(3) flow matching.☆248Updated 8 months ago
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆210Updated 3 months ago
- Protein Design with Guided Discrete Diffusion☆125Updated last year
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆94Updated 7 months ago
- Generative modeling of molecular dynamics trajectories☆146Updated 4 months ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆177Updated 10 months ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆199Updated last year
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆72Updated last year
- A list of manuscripts/tools using diffusion on biological enttieis☆96Updated last year
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆172Updated last year
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆110Updated 2 months ago
- Diffusion-based all-atom protein generative model.☆183Updated last month
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆226Updated this week
- A collection of tasks to probe the effectiveness of protein sequence representations in modeling aspects of protein design☆97Updated 5 months ago
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆105Updated 4 months ago
- ☆82Updated 5 months ago
- ☆66Updated last year
- Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation☆120Updated 2 years ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆63Updated 5 months ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆52Updated last year
- This repo contains the codes for our paper Conditional Antibody Design as 3D Equivariant Graph Translation.☆91Updated last year
- Implementation for SE(3) diffusion model with application to protein backbone generation☆356Updated last year
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆53Updated 7 months ago
- A geometry-complete diffusion generative model (GCDM) for 3D molecule generation and optimization (Nature CommsChem)☆193Updated 6 months ago
- ☆177Updated 5 months ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆83Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆72Updated 8 months ago
- ☆105Updated last year
- Aligning protein generative models with experimental fitness☆85Updated 4 months ago