Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
☆51Dec 3, 2024Updated last year
Alternatives and similar repositories for S3F
Users that are interested in S3F are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆44Aug 5, 2025Updated 8 months ago
- Protein representation and design under a single training scheme☆24Updated this week
- ☆36Nov 23, 2025Updated 5 months ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆71Aug 13, 2025Updated 8 months ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆42Jul 9, 2023Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆91Apr 10, 2026Updated 2 weeks ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆128Nov 19, 2025Updated 5 months ago
- Meta in-context learning for protein fitness prediction☆17Feb 7, 2025Updated last year
- ☆13Apr 18, 2022Updated 4 years ago
- Official repository of GENzyme☆63Nov 29, 2024Updated last year
- A geometric foundation model for enzyme retrieval with evolutionary insights.☆87Apr 21, 2026Updated last week
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆112Oct 23, 2023Updated 2 years ago
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Official repository for the ProteinGym benchmarks☆420Mar 25, 2026Updated last month
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆167Mar 28, 2026Updated last month
- ☆92May 29, 2025Updated 11 months ago
- Official repository of EnzymeFlow☆101Dec 7, 2024Updated last year
- Protein structure datasets for machine learning.☆114Apr 22, 2025Updated last year
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…☆355Jun 11, 2025Updated 10 months ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- ☆41Jul 28, 2025Updated 9 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆83Oct 24, 2025Updated 6 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆78Feb 24, 2025Updated last year
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆591Mar 8, 2026Updated last month
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆246Mar 26, 2026Updated last month
- ☆31Dec 12, 2024Updated last year
- Minimal AlphaFold☆56Aug 24, 2024Updated last year
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆152Apr 16, 2025Updated last year
- ☆39Mar 30, 2025Updated last year
- 🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)☆152Apr 10, 2026Updated 2 weeks ago
- Vabs-Net: Pre-Training Protein Bi-level Representation Through Span Mask Strategy On 3D Protein Chains☆18Sep 12, 2024Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆251Jul 24, 2025Updated 9 months ago
- Fast indexing and search of discontinuous motifs in protein structures☆138Apr 23, 2026Updated last week
- Batched Energy-Entropy acquisition for Bayesian Optimization (NeurIPS 2024)☆10Jan 6, 2025Updated last year
- A conditionally adapted protein language model for the generation of enzymes☆23Nov 26, 2024Updated last year
- Aligning protein generative models with experimental fitness☆120Mar 12, 2026Updated last month
- Efficient implementatin of ESM family.☆84Sep 9, 2025Updated 7 months ago
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated last year