Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
☆51Dec 3, 2024Updated last year
Alternatives and similar repositories for S3F
Users that are interested in S3F are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆44Aug 5, 2025Updated 9 months ago
- Protein representation and design under a single training scheme☆24May 12, 2026Updated last week
- ☆37Nov 23, 2025Updated 5 months ago
- Zero-shot prediction of mutation effects on protein function with multimodal deep representation learning☆71Aug 13, 2025Updated 9 months ago
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆42Jul 9, 2023Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- 🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…☆91Apr 10, 2026Updated last month
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆130Nov 19, 2025Updated 6 months ago
- Meta in-context learning for protein fitness prediction☆18Feb 7, 2025Updated last year
- ☆13Apr 18, 2022Updated 4 years ago
- Official repository of GENzyme☆63Nov 29, 2024Updated last year
- A geometric foundation model for enzyme retrieval with evolutionary insights.☆91Apr 21, 2026Updated 3 weeks ago
- ESM-GearNet for Protein Structure Representation Learning (https://arxiv.org/abs/2303.06275)☆112Oct 23, 2023Updated 2 years ago
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Official repository for the ProteinGym benchmarks☆426Mar 25, 2026Updated last month
- ☆92May 29, 2025Updated 11 months ago
- FAPLM: A Drop-in Efficient Pytorch Implementation of Protein Language Models☆168Mar 28, 2026Updated last month
- Official repository of EnzymeFlow☆101Dec 7, 2024Updated last year
- Protein structure datasets for machine learning.☆114Apr 22, 2025Updated last year
- This is the offical codebase to reproduce and use EVOLVEpro, a model for in silico directed evolution of protein activities using few-sho…☆352Jun 11, 2025Updated 11 months ago
- Repository for Protein-Vec, a protein embedding mixture of experts model☆38Jan 24, 2024Updated 2 years ago
- ☆41Jul 28, 2025Updated 9 months ago
- Active Learning-Assisted Directed Evolution for Protein Engineering☆84Oct 24, 2025Updated 6 months ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆79Feb 24, 2025Updated last year
- Saprot: Protein Language Model with Structural Alphabet (AA+3Di)☆600Mar 8, 2026Updated 2 months ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆251Mar 26, 2026Updated last month
- ☆31Dec 12, 2024Updated last year
- Minimal AlphaFold☆56Aug 24, 2024Updated last year
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆153Apr 16, 2025Updated last year
- ☆39Mar 30, 2025Updated last year
- 🧬 Advanced hybrid language model for directed protein evolution. (NeurIPS 2024)☆153Apr 10, 2026Updated last month
- Vabs-Net: Pre-Training Protein Bi-level Representation Through Span Mask Strategy On 3D Protein Chains☆18Sep 12, 2024Updated last year
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆256Jul 24, 2025Updated 9 months ago
- Fast indexing and search of discontinuous motifs in protein structures☆140Apr 23, 2026Updated 3 weeks ago
- A conditionally adapted protein language model for the generation of enzymes☆24Nov 26, 2024Updated last year
- Aligning protein generative models with experimental fitness☆121Mar 12, 2026Updated 2 months ago
- Efficient implementatin of ESM family.☆85Sep 9, 2025Updated 8 months ago
- LatentDE: Latent-based Directed Evolution for Protein Sequence Design☆38Apr 2, 2025Updated last year
- Multimodal encoder-only transformer model for image-based protein predictions☆15Dec 12, 2023Updated 2 years ago