DeepGraphLearning / S3F
Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
☆20Updated last month
Alternatives and similar repositories for S3F:
Users that are interested in S3F are comparing it to the libraries listed below
- This repository implements Gibbs sampling with Graph-based Smoothing☆36Updated 7 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆30Updated 2 months ago
- ☆24Updated 3 weeks ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆38Updated last month
- This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.☆21Updated last year
- Code for humanization of antibody and nanobody☆32Updated last month
- Efficient implementatin of ESM family.☆42Updated 3 weeks ago
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆15Updated last month
- ☆32Updated 3 months ago
- ☆10Updated 7 months ago
- ☆12Updated 2 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆47Updated last week
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆73Updated 6 months ago
- Structure-Informed Protein Language Model☆26Updated 10 months ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆67Updated 10 months ago
- Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2024…☆50Updated this week
- ☆11Updated last year
- Reaction-Conditioned Virtual Screening of Enzymes☆24Updated last month
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆26Updated 10 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆54Updated last year
- Augmenting zero-shot mutant prediction by retrieval-based logits fusion.☆32Updated this week
- Pretrainable geometric graph neural network for antibody affinity maturation☆41Updated 4 months ago
- ☆24Updated 3 months ago
- ☆45Updated last week
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆25Updated last year
- ☆36Updated last year
- Evaluating Protein Binding Interfaces with Transformer Networks☆40Updated last year
- ☆66Updated last year
- ☆26Updated 2 months ago