Alternatives and similar repositories for S3F

Users that are interested in S3F are comparing it to the libraries listed below

• TencentAI4S / HuDiff
  Code for humanization of antibody and nanobody
  ☆67Updated 3 months ago
• pengzhangzhi / ab_opt
  Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.
  ☆60Updated 2 years ago
• richardshuai / fampnn
  Sidechain conditioning and modeling for full-atom protein sequence design
  ☆130Updated last month
• Wangchentong / Proteus
  Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.
  ☆83Updated last year
• petergroth / kermut
  This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …
  ☆41Updated 4 months ago
• pgmikhael / clipzyme
  Reaction-Conditioned Virtual Screening of Enzymes
  ☆40Updated 6 months ago
• WillHua127 / GENzyme
  Official repository of GENzyme
  ☆59Updated last year
• liuyf020419 / SCUBA-D
  ☆61Updated last year
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆49Updated 2 months ago
• mabr3112 / riff_diff_protflow
  ProtFlow Implementation of the RiffDiff pipeline to design enzymes from theozymes.
  ☆60Updated 3 weeks ago
• Mingchenchen / AF3Score
  A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation
  ☆80Updated 4 months ago
• YuzheWangPKU / DiffPepBuilder
  Official repository for DiffPepBuilder and DiffPepDock tools
  ☆113Updated 2 months ago
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆40Updated last year
• LeiLiLab / EnzyGen
  ☆39Updated 6 months ago
• wengong-jin / DSMBind
  ☆97Updated last year
• stebliankin / piston
  Evaluating Protein Binding Interfaces with Transformer Networks
  ☆46Updated 2 years ago
• AstraZeneca / DiffAbXL
  The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…
  ☆90Updated 6 months ago
• LBM-EPFL / CARBonAra
  Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…
  ☆46Updated last month
• meilerlab / HyperMPNN
  HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles
  ☆68Updated 5 months ago
• wangxr0526 / EasIFA
  Code of “Multi-Modal Deep Learning Enables Ultrafast and Accurate Annotation of Enzymatic Active Sites”
  ☆45Updated last month
• alexechu / protpardelle
  ☆65Updated 2 years ago
• TianZhuAI4S / DiffAffinity
  Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)
  ☆37Updated 2 years ago
• zhengkangjie / ESM-AA
  ☆76Updated 10 months ago
• Profluent-AI / progen3
  Public Release of ProGen3 family of Models
  ☆93Updated 5 months ago
• Kuhlman-Lab / evopro
  ☆93Updated 2 months ago
• ai4protein / ProtSSN
  🧬 Fusion of protein sequence and structural information, using denoising pre-training network for zero-shot protein engineering (eLife 2…
  ☆79Updated 7 months ago
• danny305 / StabilityOracle
  ☆29Updated 2 months ago
• WillHua127 / EnzymeFlow
  Official repository of EnzymeFlow
  ☆97Updated last year
• blt2114 / MotifBench
  A standardized protein design benchmark for motif-scaffolding problems
  ☆72Updated this week
• meneshail / TopoDiff
  Code release for "Improving diffusion-based protein backbone generation with global-geometry-aware latent encoding"
  ☆44Updated 4 months ago