DeepGraphLearning / S3FLinks
Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)
☆43Updated 9 months ago
Alternatives and similar repositories for S3F
Users that are interested in S3F are comparing it to the libraries listed below
Sorting:
- Code for humanization of antibody and nanobody☆52Updated 2 weeks ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆80Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆117Updated 2 months ago
- Extension of ThermoMPNN for double mutant predictions☆43Updated last month
- This is the official code repository for the paper NeurIPS 2024 spotlight paper "Kermut: Composite kernel regression for protein variant …☆32Updated last month
- Evaluating Protein Binding Interfaces with Transformer Networks☆47Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆83Updated 3 months ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆100Updated 2 weeks ago
- HyperMPNN ‒ A general strategy to design thermostable proteins learned from hyperthermophiles☆63Updated 2 months ago
- Reaction-Conditioned Virtual Screening of Enzymes☆35Updated 3 months ago
- Official repository of EnzymeFlow☆94Updated 9 months ago
- ☆28Updated last year
- ☆116Updated 3 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆72Updated last month
- ☆61Updated last year
- ☆65Updated 2 years ago
- ☆87Updated last month
- Official repository of GENzyme☆54Updated 9 months ago
- Deep learning framework for protein sequence design from a backbone scaffold that can leverage the molecular context including non-protei…☆44Updated 9 months ago
- ☆92Updated 11 months ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆97Updated 3 weeks ago
- ☆29Updated last month
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆85Updated last week
- workflow used to prepare PPB-Affinity database☆27Updated last year
- Official Implementation of IgGM☆81Updated 2 weeks ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆52Updated 3 months ago
- ☆76Updated 7 months ago
- Graphinity: Equivariant Graph Neural Network Architecture for Predicting Change in Antibody-Antigen Binding Affinity☆48Updated 2 months ago
- Predicting mutational effects on protein-protein binding via a side-chain diffusion probabilistic model (NeurIPS 2023 Poster)☆37Updated last year