DreamFold / FoldFlow
FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation
☆206Updated 2 months ago
Alternatives and similar repositories for FoldFlow:
Users that are interested in FoldFlow are comparing it to the libraries listed below
- Fast protein backbone generation with SE(3) flow matching.☆242Updated 6 months ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆352Updated last year
- ☆133Updated 11 months ago
- Implementation of Torsional Diffusion for Molecular Conformer Generation (NeurIPS 2022)☆258Updated last year
- Code for “FlowMM Generating Materials with Riemannian Flow Matching” and "FlowLLM: Flow Matching for Material Generation with Large Langu…☆108Updated 3 months ago
- Mixed continous/categorical flow-matching model for de novo molecule generation.☆93Updated last week
- [ICLR 2023 Spotlight] Equiformer: Equivariant Graph Attention Transformer for 3D Atomistic Graphs☆226Updated this week
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆91Updated 6 months ago
- Code for the paper https://arxiv.org/abs/2402.04997☆67Updated last year
- MiDi: Mixed Graph and 3D Denoising Diffusion for Molecule Generation☆97Updated 4 months ago
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆169Updated last year
- The official implementation of 3D Equivariant Diffusion for Target-Aware Molecule Generation and Affinity Prediction (ICLR 2023)☆233Updated last year
- Geometric Latent Diffusion Models for 3D Molecule Generation☆228Updated last year
- ☆96Updated 9 months ago
- Implementation of the Equiformer, SE3/E3 equivariant attention network that reaches new SOTA, and adopted for use by EquiFold for protein…☆255Updated last month
- DiffLinker: Equivariant 3D-Conditional Diffusion Model for Molecular Linker Design☆318Updated 9 months ago
- A list of manuscripts/tools using diffusion on biological enttieis☆96Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆174Updated 9 months ago
- [ICLR 2024] "Latent 3D Graph Diffusion" by Yuning You, Ruida Zhou, Jiwoong Park, Haotian Xu, Chao Tian, Zhangyang Wang, Yang Shen☆42Updated 7 months ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆197Updated last year
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆220Updated 9 months ago
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆405Updated last month
- Generative modeling of molecular dynamics trajectories☆140Updated 3 months ago
- A geometry-complete diffusion generative model (GCDM) for 3D molecule generation and optimization (Nature CommsChem)☆188Updated 5 months ago
- Geometric Vector Perceptrons --- a rotation-equivariant GNN for learning from biomolecular structure☆259Updated 2 years ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆52Updated last year
- GEOM: Energy-annotated molecular conformations☆213Updated 2 years ago
- Protein Design with Guided Discrete Diffusion☆123Updated 11 months ago
- This Denoising Force Field (DFF) codebase provides a Pytorch framework for the method presented in Two for one: Diffusion models and forc…☆56Updated 8 months ago
- Code for the paper Iterated Denoising Energy Matching for Sampling from Boltzmann Densities.☆46Updated 2 weeks ago