FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation
☆278Dec 10, 2024Updated last year
Alternatives and similar repositories for FoldFlow
Users that are interested in FoldFlow are comparing it to the libraries listed below
Sorting:
- Implementation for SE(3) diffusion model with application to protein backbone generation☆415Jul 3, 2023Updated 2 years ago
- Fast protein backbone generation with SE(3) flow matching.☆317Jul 19, 2024Updated last year
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆518Oct 21, 2025Updated 5 months ago
- Diffusion-based all-atom protein generative model.☆233Aug 27, 2025Updated 6 months ago
- ☆221Mar 2, 2024Updated 2 years ago
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆186Apr 21, 2024Updated last year
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆60May 6, 2024Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆72Jan 31, 2024Updated 2 years ago
- A generative model for programmable protein design☆803Apr 11, 2024Updated last year
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆245Jul 24, 2025Updated 7 months ago
- Public RFDiffusionAA repo☆472Jul 9, 2024Updated last year
- Flow-matching for coarse graining of miniproteins.☆19Nov 18, 2022Updated 3 years ago
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆190Jun 24, 2024Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆88Jun 23, 2024Updated last year
- The Family of Diffusion Protein Language Models (DPLM)☆315Jul 25, 2025Updated 7 months ago
- Implementation of FlowSite and HarmonicFlow from the paper "Harmonic Self-Conditioned Flow Matching for Multi-Ligand Docking and Binding …☆105Jul 30, 2024Updated last year
- ☆65Sep 14, 2023Updated 2 years ago
- Generative modeling of molecular dynamics trajectories☆205Nov 23, 2025Updated 3 months ago
- Joint sequence and structure generation with RoseTTAFold sequence space diffusion☆331Oct 28, 2024Updated last year
- EigenFold: Generative Protein Structure Prediction with Diffusion Models☆180Apr 6, 2023Updated 2 years ago
- Benchmarking framework for protein representation learning. Includes a large number of pre-training and downstream task datasets, models …☆267Apr 27, 2025Updated 10 months ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆18Feb 8, 2024Updated 2 years ago
- ☆31Dec 12, 2024Updated last year
- Official repository for discrete Walk-Jump Sampling (dWJS)☆56Dec 17, 2023Updated 2 years ago
- code for "Riemannian Flow Matching on General Geometries".☆290Mar 13, 2024Updated 2 years ago
- PINDER: The Protein INteraction Dataset and Evaluation Resource☆153Nov 15, 2024Updated last year
- Aligning protein generative models with experimental fitness☆120Mar 12, 2026Updated last week
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆81Mar 7, 2024Updated 2 years ago
- ☆22Nov 6, 2024Updated last year
- Protein Design with Guided Discrete Diffusion☆141Feb 21, 2024Updated 2 years ago
- ☆117Jan 3, 2026Updated 2 months ago
- Official repository for DiffPepBuilder and DiffPepDock tools☆121Oct 24, 2025Updated 4 months ago
- Protein-ligand structure prediction☆239Jul 31, 2025Updated 7 months ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆74Feb 24, 2025Updated last year
- Diffusion models of protein structure; trigonometry and attention are all you need!☆565Dec 12, 2023Updated 2 years ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆103May 25, 2025Updated 9 months ago
- ☆244May 22, 2023Updated 2 years ago
- GNN trained to predict changes in thermodynamic stability for protein point mutants☆232Aug 7, 2025Updated 7 months ago
- Implementation of DiffDock-PP: Rigid Protein-Protein Docking with Diffusion Models in PyTorch (ICLR 2023 - MLDD Workshop)☆232Dec 29, 2023Updated 2 years ago