blt2114 / MotifBenchLinks
A standardized protein design benchmark for motif-scaffolding problems
☆59Updated last month
Alternatives and similar repositories for MotifBench
Users that are interested in MotifBench are comparing it to the libraries listed below
Sorting:
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆59Updated last week
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆75Updated 11 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆92Updated last week
- This repository implements Gibbs sampling with Graph-based Smoothing☆38Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆106Updated 3 months ago
- Structure-conditioned masked language modeling for protein sequence design☆62Updated last year
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆59Updated last year
- ☆94Updated this week
- ☆89Updated 7 months ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆36Updated 6 months ago
- Public Release of ProGen3 family of Models☆70Updated last month
- ☆60Updated last year
- Code for humanization of antibody and nanobody☆42Updated 6 months ago
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- ☆112Updated this week
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆44Updated 4 months ago
- A benchmark for 3D biomolecular structure prediction models☆60Updated 3 weeks ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆71Updated this week
- [ICLR2025] Official Implementation of IgGM: A Generative Model for Functional Antibody and Nanobody Design☆74Updated 3 weeks ago
- Aligning protein generative models with experimental fitness☆96Updated 3 weeks ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆48Updated 2 weeks ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆35Updated last week
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆77Updated last year
- 3D equivariant graph transformer for all-atom refinement of protein tertiary structures☆26Updated last year
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆26Updated last year
- ☆65Updated last year
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆48Updated 2 weeks ago
- Target Sequence-Conditioned Generation of Peptide Binders via Masked Language Modeling☆55Updated 10 months ago
- ☆67Updated 2 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆42Updated 6 months ago