blt2114 / MotifBenchLinks
A standardized protein design benchmark for motif-scaffolding problems
☆70Updated 4 months ago
Alternatives and similar repositories for MotifBench
Users that are interested in MotifBench are comparing it to the libraries listed below
Sorting:
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆84Updated last year
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆115Updated 6 months ago
- Aligning protein generative models with experimental fitness☆113Updated last month
- Sidechain conditioning and modeling for full-atom protein sequence design☆127Updated last month
- Code for humanization of antibody and nanobody☆65Updated 3 months ago
- Public Release of ProGen3 family of Models☆91Updated 4 months ago
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆89Updated 6 months ago
- ☆128Updated 6 months ago
- ☆71Updated 8 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆40Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆46Updated last year
- ☆74Updated 6 months ago
- ☆65Updated 2 years ago
- Official repository of EnzymeFlow☆97Updated last year
- Official repository for DiffPepBuilder and DiffPepDock tools☆110Updated last month
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 6 months ago
- Codebase for Germinal, a broadly enabling generative pipeline for efficient generation of epitope-targeted de novo antibodies.☆165Updated 2 weeks ago
- Profluent-E1 family of Protein Encoder Models☆93Updated 2 weeks ago
- AlphaBind code + model accompanying pre-print☆86Updated 4 months ago
- ☆61Updated last year
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆78Updated 3 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆57Updated 6 months ago
- ☆96Updated last year
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆113Updated 3 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆49Updated 2 months ago
- composite-objective protein design☆121Updated this week
- ☆53Updated 6 months ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆145Updated 7 months ago