A standardized protein design benchmark for motif-scaffolding problems
☆83Aug 27, 2026Updated 2 months ago
Alternatives and similar repositories for MotifBench
Users that are interested in MotifBench are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆74Aug 4, 2026Updated 2 months ago
- Sidechain conditioning and modeling for full-atom protein sequence design☆150Nov 11, 2025Updated 11 months ago
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆88Oct 2, 2026Updated 3 weeks ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆281Jul 24, 2025Updated last year
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆126May 27, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆196Jun 24, 2024Updated 2 years ago
- ☆15Mar 28, 2025Updated last year
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆87May 27, 2026Updated 5 months ago
- A partially latent flow matching model for the joint generation of a protein’s amino acid sequence and full atomistic structure, includin…☆313Sep 23, 2025Updated last year
- A Unified Evaluation Suite for Protein Design☆141Jan 27, 2026Updated 9 months ago
- Fast protein backbone generation with SE(3) flow matching.☆329Jul 19, 2024Updated 2 years ago
- Joint embedding of protein sequence and structure with discrete and continuous compressions of protein folding model latent spaces. http:…☆155Apr 16, 2025Updated last year
- Feynman-Kac steering for controllable protein diffusion☆39Aug 16, 2026Updated 2 months ago
- ☆21Nov 21, 2025Updated 11 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Structure-conditioned masked language modeling for protein sequence design☆75Jan 31, 2024Updated 2 years ago
- Official repository of PXDesign☆272Dec 31, 2025Updated 9 months ago
- Implementation for SE(3) diffusion model with application to protein backbone generation☆426Jul 3, 2023Updated 3 years ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- Official open-source of CarbonNovo: Joint Design of Protein Structure and Sequence Using a Unified Energy-based Model☆27Nov 18, 2024Updated last year
- Deconvolving mutation effects on protein stability and function with disentangled protein language models☆19May 15, 2026Updated 5 months ago
- [ICML 2024] Floating Anchor Diffusion Model for Multi-motif Scaffolding☆34Aug 23, 2024Updated 2 years ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆90Jun 23, 2024Updated 2 years ago
- Biomolecular co-folding, binder filtering, and nanobody design☆93Jun 28, 2026Updated 4 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆81May 4, 2026Updated 5 months ago
- ☆119Jan 3, 2026Updated 9 months ago
- SwitchCraft: A Programmatic Framework for Designing State-Switching Proteins☆96Jun 1, 2026Updated 4 months ago
- ☆87Jun 10, 2026Updated 4 months ago
- protein structure generation with sparse all-atom denoising models☆65Sep 30, 2026Updated last month
- Official repository of EnzymeFlow☆102Dec 7, 2024Updated last year
- ☆43Mar 30, 2025Updated last year
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- Allosteric design of proteins using allosteric pathways, stability calculations, and normal mode analysis☆12Jan 11, 2026Updated 9 months ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- ☆145Jun 3, 2025Updated last year
- Practically and asymptotically accurate conditional sampling from diffusion generative models without conditional training☆50Nov 24, 2024Updated last year
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆13Nov 14, 2025Updated 11 months ago
- Joint Protein-Ligand Embedding☆11Oct 3, 2025Updated last year
- ☆57Apr 22, 2026Updated 6 months ago
- The Family of Diffusion Protein Language Models (DPLM)☆350Jul 25, 2025Updated last year
- Structural Quality Assessment for Biomolecular Structure Prediction Models☆104Aug 7, 2026Updated 2 months ago