A standardized protein design benchmark for motif-scaffolding problems
☆78Jan 27, 2026Updated 2 months ago
Alternatives and similar repositories for MotifBench
Users that are interested in MotifBench are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆250Jul 24, 2025Updated 8 months ago
- Protein representation and design under a single training scheme☆24Mar 3, 2026Updated last month
- Sidechain conditioning and modeling for full-atom protein sequence design☆138Nov 11, 2025Updated 5 months ago
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆65Feb 2, 2026Updated 2 months ago
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆122May 27, 2025Updated 10 months ago
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- ☆27Aug 8, 2025Updated 8 months ago
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆190Jun 24, 2024Updated last year
- ☆19Nov 21, 2025Updated 4 months ago
- Official open-source of Accurate structure prediction of immune proteins using parameter-efficient transfer learning☆23Mar 19, 2025Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆88Jun 23, 2024Updated last year
- ☆16Mar 28, 2025Updated last year
- Structure-conditioned masked language modeling for protein sequence design☆73Jan 31, 2024Updated 2 years ago
- Official open-source of CarbonNovo: Joint Design of Protein Structure and Sequence Using a Unified Energy-based Model☆26Nov 18, 2024Updated last year
- Official repository of EnzymeFlow☆100Dec 7, 2024Updated last year
- Wordpress hosting with auto-scaling on Cloudways • AdFully Managed hosting built for WordPress-powered businesses that need reliable, auto-scalable hosting. Cloudways SafeUpdates now available.
- PLACER is graph neural network for local prediction of protein-ligand conformational ensembles.☆239Nov 5, 2025Updated 5 months ago
- ☆32Mar 29, 2026Updated 2 weeks ago
- A Unified Evaluation Suite for Protein Design☆129Jan 27, 2026Updated 2 months ago
- ☆42Jun 12, 2025Updated 10 months ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated last year
- ☆11Aug 26, 2024Updated last year
- ☆117Jan 3, 2026Updated 3 months ago
- Official code repository for the paper "ProteinNPT: Improving Protein Property Prediction and Design with Non-Parametric Transformers"☆128Nov 19, 2025Updated 4 months ago
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 4 months ago
- NordVPN Special Discount Offer • AdSave on top-rated NordVPN 1 or 2-year plans with secure browsing, privacy protection, and support for for all major platforms.
- protein structure generation with sparse all-atom denoising models☆60Mar 25, 2026Updated 2 weeks ago
- Extension of ThermoMPNN for double mutant predictions☆57Mar 23, 2026Updated 2 weeks ago
- ML-optimized library design with improved fitness and diversity for protein engineering☆37Nov 5, 2025Updated 5 months ago
- Fast protein backbone generation with SE(3) flow matching.☆322Jul 19, 2024Updated last year
- Code for Pre-training Protein Encoder via Siamese Sequence-Structure Diffusion Trajectory Prediction (https://arxiv.org/abs/2301.12068)☆42Jul 9, 2023Updated 2 years ago
- Graphormer Based Protein Sequence Design☆26Feb 2, 2024Updated 2 years ago
- A partially latent flow matching model for the joint generation of a protein’s amino acid sequence and full atomistic structure, includin…☆288Sep 23, 2025Updated 6 months ago
- Aligning protein generative models with experimental fitness☆120Mar 12, 2026Updated 3 weeks ago
- Scripts to run AlphaFold3, Boltz-1 and Chai-1 with MMseqs2 MSAs and custom templates.☆105Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆137Jun 3, 2025Updated 10 months ago
- Fold Conditioned protein design pipeline based on AF2Multimer Hallucination☆50Mar 25, 2026Updated 2 weeks ago
- User friendly and accurate binder design pipeline☆1,061Mar 13, 2026Updated 3 weeks ago
- ☆124Jul 12, 2024Updated last year
- Official repository for the ProteinGym benchmarks☆413Mar 25, 2026Updated 2 weeks ago
- Diffusion-based all-atom protein generative model.☆233Aug 27, 2025Updated 7 months ago
- Code for deep learning guided design of dynamic proteins☆32Jul 16, 2024Updated last year