blt2114 / MotifBenchLinks
A standardized protein design benchmark for motif-scaffolding problems
☆73Updated 2 weeks ago
Alternatives and similar repositories for MotifBench
Users that are interested in MotifBench are comparing it to the libraries listed below
Sorting:
- All-atom protein generation using latent diffusion, with compositional function and taxonomic prompts. http://bit.ly/plaid-proteins☆120Updated 8 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆85Updated last year
- Sidechain conditioning and modeling for full-atom protein sequence design☆133Updated 2 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆41Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆91Updated 7 months ago
- Code for humanization of antibody and nanobody☆72Updated 5 months ago
- Aligning protein generative models with experimental fitness☆117Updated 3 months ago
- ☆65Updated 2 years ago
- Sequence-Structure-Surface Model for Protein Fitness Prediction (S3F)☆47Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆65Updated last week
- Structure-conditioned masked language modeling for protein sequence design☆70Updated 2 years ago
- Official repository of EnzymeFlow☆98Updated last year
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆81Updated last year
- ☆133Updated 8 months ago
- Public Release of ProGen3 family of Models☆98Updated 6 months ago
- Official implementation of Generative Diffusion Models for Antibody Design, Docking, and Optimization.☆60Updated 2 years ago
- ☆96Updated last year
- ☆74Updated 10 months ago
- ☆76Updated 8 months ago
- ☆61Updated last year
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆52Updated 2 months ago
- A benchmark for 3D biomolecular structure prediction models☆69Updated 8 months ago
- A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation☆108Updated last week
- Official Implemetation of ConfDiff (ICML'24) - Protein Conformation Generation via Force-Guided SE(3) Diffusion Models☆75Updated last year
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆57Updated last month
- Profluent-E1 family of Protein Encoder Models☆102Updated 2 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆61Updated 8 months ago
- 🧬 Augmenting zero-shot mutant prediction by retrieval-based logits fusion. (ISMB/ECCB 2025)☆122Updated 5 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆60Updated this week
- Official repository for DiffPepBuilder and DiffPepDock tools☆116Updated 3 months ago