Alternatives and similar repositories for protein_shapes

Users that are interested in protein_shapes are comparing it to the libraries listed below

• HannesStark / CodonMPNN
  ☆27Updated 5 months ago
• amelvim / antibody-diffusion-properties
  Guiding diffusion models for antibody sequence and structure co-design with developability properties.
  ☆33Updated 6 months ago
• Kuhlman-Lab / ThermoMPNN-D
  Extension of ThermoMPNN for double mutant predictions
  ☆32Updated 2 months ago
• ShenLab / SeqDance
  code for SeqDance/ESMDance, biophysics-informed protein language models
  ☆34Updated last month
• A4Bio / FoldToken_open
  ☆17Updated 6 months ago
• compsciencelab / mdCATH
  This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…
  ☆42Updated 5 months ago
• LongxingCao / pymol_scripts
  bakerlab pymol scripts
  ☆23Updated 5 years ago
• Croydon-Brixton / proteinmpnn_wrapper
  A thin wrapper around ProteinMPNN for convenient sampling without having to write out or consume files
  ☆11Updated last year
• PeptoneLtd / proteinmpnn_ddg
  Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.
  ☆47Updated 5 months ago
• davidekim / parametric_barrels
  ☆12Updated 3 months ago
• iambic-therapeutics / np-bench
  A benchmark for 3D biomolecular structure prediction models
  ☆57Updated this week
• Junjie-Zhu / IDPFold
  IDPFold test version
  ☆19Updated 8 months ago
• meilerlab / probabilities_design
  ☆13Updated last month
• matsagad / mres-project
  Conditioning diffusion models for scaffolding protein motifs. A repository for my master's dissertation.
  ☆10Updated 5 months ago
• vsomnath / flexdock
  Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)
  ☆37Updated 2 weeks ago
• Kuhlman-Lab / PIPPack
  Implementation of Protein Invariant Point Packer (PIPPack)
  ☆32Updated 11 months ago
• mjendrusch / salad
  protein structure generation with sparse all-atom denoising models
  ☆31Updated 3 weeks ago
• ohuelab / Solubility_AfDesign
  Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol
  ☆31Updated last year
• tiwarylab / af2rave
  Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2
  ☆46Updated this week
• bzho3923 / CPDiffusion
  ☆23Updated 7 months ago
• ikalvet / invrotzyme
  Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.
  ☆19Updated 2 months ago
• RosettaCommons / AF2_peptide_hallucination
  Code for designing binders to flexible peptides with AlphaFold2 Hallucination
  ☆23Updated last year
• issararab / PEvoLM
  Protein Sequence Evolutionary Information Language Model
  ☆12Updated last year
• Profluent-Internships / ProCALM
  A conditionally adapted protein language model for the generation of enzymes
  ☆21Updated 5 months ago
• petergroth / FLOP
  This is the official code repository for the paper FLOP: Tasks for Fitness Landscapes Of Protein wildtypes by Groth et al.
  ☆22Updated last year
• kosonocky / bits-to-binders-resources
  Resources for the BioML Challenge 2024: Bits to Binders
  ☆16Updated 8 months ago
• KULL-Centre / _2023_Blaabjerg_SSEmb
  ☆34Updated 7 months ago
• CataAI / PoseX
  PoseX: A Molecular Docking Benchmark
  ☆29Updated this week
• kirjner / GGS
  This repository implements Gibbs sampling with Graph-based Smoothing
  ☆38Updated 11 months ago
• sokrypton / roscon2024
  Tutorial files
  ☆11Updated 9 months ago