ProteinDesignLab / protein_shapesLinks
Metrics to evaluate distributional coverage of generative models of protein structures.
☆15Updated 7 months ago
Alternatives and similar repositories for protein_shapes
Users that are interested in protein_shapes are comparing it to the libraries listed below
Sorting:
- ☆28Updated 7 months ago
- Novel estimator for the change in stability upon point mutation in monomeric and multimeric proteins.☆51Updated 2 months ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆33Updated 9 months ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆34Updated last year
- A conditionally adapted protein language model for the generation of enzymes☆22Updated 8 months ago
- protein structure generation with sparse all-atom denoising models☆35Updated last week
- ☆38Updated 10 months ago
- IDPFold test version☆21Updated 10 months ago
- ☆26Updated last week
- Conditioning diffusion models for scaffolding protein motifs. A repository for my master's dissertation.☆10Updated 7 months ago
- A benchmark for 3D biomolecular structure prediction models☆63Updated 2 months ago
- Pretrained METL models with minimal dependencies☆14Updated 2 months ago
- Protein Sequence Evolutionary Information Language Model☆13Updated last year
- ☆13Updated 6 months ago
- Resources for the BioML Challenge 2024: Bits to Binders☆16Updated 11 months ago
- ☆28Updated 9 months ago
- ☆13Updated last year
- Generative diverse protein backbones by protein language model☆32Updated 7 months ago
- Utility for building inverse rotamer assemblies out of a Rosetta matcher/enzdes constraint file.☆22Updated 5 months ago
- This repository contains the AlphaCutter.py for the removal of non-globular regions from predicted protein structures.☆15Updated 2 years ago
- A thin wrapper around ProteinMPNN for convenient sampling without having to write out or consume files☆11Updated last year
- Boltzmann-ranked alternative protein conformations from reduced-MSA AlphaFold2☆51Updated 3 weeks ago
- Controlling the usage of hydrophobic residues on AfDesign for binder peptide design with AlphaFold hallucination protocol☆32Updated last year
- ☆62Updated 2 months ago
- Converts AlphaFold distograms into distance matrices and saves them into a number of formats☆12Updated 2 years ago
- MiniFold: Simple, Fast and Accurate Protein Structure Prediction☆27Updated 3 weeks ago
- Composing Unbalanced Flows for Flexible Docking and Relaxation (ICLR 2025)☆46Updated last month
- code for SeqDance/ESMDance, biophysics-informed protein language models☆39Updated 4 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆44Updated 8 months ago
- Mutational Effect Transfer Learning (METL) framework for pretraining and finetuning biophysics-informed protein language models☆38Updated last month