Metrics to evaluate distributional coverage of generative models of protein structures.
☆21Aug 13, 2025Updated 11 months ago
Alternatives and similar repositories for protein_shapes
Users that are interested in protein_shapes are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆31Dec 12, 2024Updated last year
- ☆47Sep 16, 2024Updated last year
- Potts model-based protein sequence design☆109Jul 1, 2026Updated last month
- Sidechain conditioning and modeling for full-atom protein sequence design☆145Nov 11, 2025Updated 8 months ago
- Explore protein fold space with deep generative models☆16Aug 5, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Diffusion-based all-atom protein generative model.☆237Aug 27, 2025Updated 11 months ago
- ☆24Nov 6, 2024Updated last year
- Structure prediction of alternative protein conformations☆86Feb 24, 2025Updated last year
- Official code release for Ambient Protein Diffusion☆35Aug 30, 2025Updated 11 months ago
- Implementation of Protein Invariant Point Packer (PIPPack)☆37May 28, 2024Updated 2 years ago
- ProteinDesign with RFdiffusion and ProteinMPNN/LigandMPNN☆23Mar 6, 2025Updated last year
- ☆24Updated this week
- Code for the paper "Learning to engineer protein flexibility".☆22Mar 24, 2026Updated 4 months ago
- Some scripts that I keep using over and over.☆21Jul 5, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆74Feb 13, 2026Updated 5 months ago
- PyPEF – Pythonic Protein Engineering Framework☆16Updated this week
- Updated Protpardelle models with more robust motif scaffolding and multichain support☆83May 1, 2026Updated 3 months ago
- Inference code for PoET: A generative model of protein families as sequences-of-sequences☆105Apr 24, 2024Updated 2 years ago
- ☆15Mar 28, 2025Updated last year
- ☆25Jun 10, 2026Updated 2 months ago
- ☆34Jun 9, 2026Updated 2 months ago
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆62Dec 16, 2025Updated 7 months ago
- Pretrained METL models with minimal dependencies☆16Sep 18, 2025Updated 10 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ☆19Apr 3, 2026Updated 4 months ago
- Adapting protein language models for structure-conditioned design☆42Aug 5, 2024Updated 2 years ago
- Resources for the BioML Challenge 2024: Bits to Binders☆20Aug 24, 2024Updated last year
- De Novo Protein Design by Equivariantly Diffusing Oriented Residue Clouds☆189Apr 21, 2024Updated 2 years ago
- ☆27Feb 10, 2024Updated 2 years ago
- [ICML 25] We train and evaluate SAEs to identify interpretable features in pLMs and show their potential for scientific discovery.☆127Apr 23, 2026Updated 3 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆90Jun 23, 2024Updated 2 years ago
- Official repository for IDiom☆17Jun 29, 2026Updated last month
- Fast protein structure searching or your money back☆119Apr 13, 2026Updated 3 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- random colab notebooks for biology☆26Aug 23, 2025Updated 11 months ago
- Design a local part of a protein☆20Jan 12, 2023Updated 3 years ago
- ☆19Jun 2, 2026Updated 2 months ago
- Protein structure diffusion model for unconditional protein generation and motif scaffolding☆193Jun 24, 2024Updated 2 years ago
- ☆58May 26, 2026Updated 2 months ago
- Finding patch of conserved amino acid sites in 3D structure☆14Apr 13, 2025Updated last year
- Python Toolbox For Rosetta Silent Files Processing☆17May 23, 2019Updated 7 years ago