Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
☆243May 8, 2023Updated 3 years ago
Alternatives and similar repositories for scCATCH
Users that are interested in scCATCH are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Multi-sample multi-group scRNA-seq analysis tools☆237Jul 6, 2026Updated 2 weeks ago
- Cell-type Annotation for Single-cell Transcriptomics using Deep Learning with a Weighted Graph Neural Network☆109Jul 6, 2023Updated 3 years ago
- SCSA: cell type annotation for single-cell RNA-seq data☆94Apr 11, 2023Updated 3 years ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆335Nov 1, 2022Updated 3 years ago
- Automated cell type classification☆116Jan 3, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Fast, sensitive and accurate integration of single-cell data with Harmony☆665Jun 5, 2026Updated last month
- ☆309Nov 10, 2024Updated last year
- R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data☆794Jan 6, 2024Updated 2 years ago
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆346Jul 28, 2020Updated 5 years ago
- R package for integrating and analyzing multiple single-cell datasets☆431Feb 4, 2026Updated 5 months ago
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 7 months ago
- SingleCellNet: classify single cells across species and platforms☆142Aug 21, 2023Updated 2 years ago
- A manually curated database of literature-supported ligand-receptor interactions in human and mouse☆37Jul 1, 2024Updated 2 years ago
- Clone of the Bioconductor repository for the SingleR package.☆204Jul 7, 2026Updated 2 weeks ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A toolkit for single-cell immune profiling☆372Jul 9, 2026Updated last week
- R package for detecting doublets in single-cell RNA sequencing data☆554Mar 21, 2025Updated last year
- Automated, probabilistic assignment of cell types in scRNA-seq data☆213Jan 9, 2023Updated 3 years ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆304Jun 30, 2026Updated 2 weeks ago
- A guide to using a Seurat object in conjunction with RNA Velocity☆142Dec 25, 2021Updated 4 years ago
- Easy single cell analysis platform for enrichment☆228Apr 3, 2026Updated 3 months ago
- Interactively analyze single cell genomic data☆188Jan 14, 2026Updated 6 months ago
- Scissor package☆270May 10, 2024Updated 2 years ago
- Methods for detecting doublets in single-cell sequencing data☆258Jul 7, 2026Updated 2 weeks ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- NicheNet: predict active ligand-target links between interacting cells☆665Jun 1, 2026Updated last month
- scPred package for cell type prediction from scRNA-seq data☆104Jan 18, 2024Updated 2 years ago
- Interpretation of cell states using reference single-cell maps☆323Dec 19, 2025Updated 7 months ago
- Inferring CNV from Single-Cell RNA-Seq☆677Nov 14, 2025Updated 8 months ago
- AUCell: score single cells with gene regulatory networks☆199Mar 9, 2024Updated 2 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆266Jan 10, 2026Updated 6 months ago
- A portable and fast single cell type identifier☆64May 12, 2021Updated 5 years ago
- iCellR is an interactive R package designed to facilitate the analysis and visualization of high-throughput single-cell sequencing data. …☆126Nov 10, 2025Updated 8 months ago
- Tools and methods for analysis of single cell assay data in R☆265Oct 17, 2025Updated 9 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A tool for semi-automatic cell type classification☆496May 22, 2026Updated last month
- TRAjectory-based Differential Expression analysis for SEQuencing data☆306Jun 17, 2025Updated last year
- The source code and results of performance comparison on the detail of the process among scCATCH, CellAssign, Garnett, SingleR, scMap and…☆15Jan 8, 2023Updated 3 years ago
- Infer cell types in scRNA-seq data using bulk RNA-seq or gene sets☆125Apr 16, 2025Updated last year
- An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.☆661Mar 11, 2026Updated 4 months ago
- scLearn:Learning for single cell assignment☆35Dec 13, 2024Updated last year
- R package implementation of Milo for testing for differential abundance in KNN graphs☆439May 11, 2026Updated 2 months ago