ZJUFanLab / scCATCH
Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data
☆223Updated last year
Alternatives and similar repositories for scCATCH:
Users that are interested in scCATCH are comparing it to the libraries listed below
- MultiNicheNet: a flexible framework for differential cell-cell communication analysis from multi-sample multi-condition single-cell trans…☆138Updated last month
- A guide to using a Seurat object in conjunction with RNA Velocity☆136Updated 3 years ago
- Scissor package☆206Updated 9 months ago
- R package to quantify and remove cell free mRNAs from droplet based scRNA-seq data☆264Updated 2 years ago
- LIANA: a LIgand-receptor ANalysis frAmework☆192Updated 6 months ago
- Clone of the Bioconductor repository for the SingleR package.☆182Updated this week
- ☆225Updated 7 months ago
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆242Updated 2 weeks ago
- This repository contains R code, with which you can create 3D UMAP and tSNE plots of Seurat analyzed scRNAseq data☆121Updated last year
- A tool for detecting somatic variants in single cell data☆189Updated 5 months ago
- A scalable SCENIC workflow for single-cell gene regulatory network analysis☆149Updated 2 years ago
- Quantifying metabolism activity at the single-cell resolution☆127Updated 6 months ago
- Generate high quality, publication ready visualizations for single cell transcriptomics data.☆177Updated last week
- SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) a…☆204Updated 3 weeks ago
- ☆162Updated 5 months ago
- SingleCellNet: classify single cells across species and platforms☆135Updated last year
- Interpretation of cell states using reference single-cell maps☆263Updated 3 months ago
- Some tools for plotting single-cell data☆167Updated last month
- scDIOR: Single cell data IO softwaRe☆139Updated 3 years ago
- An R package to test for batch effects in high-dimensional single-cell RNA sequencing data.☆158Updated last year
- Methods for detecting doublets in single-cell sequencing data☆181Updated this week
- SingleR: Single-cell RNA-seq cell types Recognition (legacy version)☆282Updated 4 years ago
- R package for modeling single cell UMI expression data using regularized negative binomial regression☆220Updated 2 months ago
- ☆253Updated 3 months ago
- reticulate-free single cell format conversion☆124Updated 2 months ago
- Clustering scRNAseq by genotypes☆175Updated 3 months ago
- Dataset distribution for Seurat☆135Updated last year
- A Fully Bayesian Inference of Tumor Microenvironment composition and gene expression☆172Updated 3 months ago
- EcoTyper is a machine learning framework for large-scale identification of cell states and cellular ecosystems from gene expression data.☆193Updated 10 months ago
- Gene set scoring for single-cell data☆143Updated 3 months ago