A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations
☆36Jan 28, 2022Updated 4 years ago
Alternatives and similar repositories for MesKit
Users that are interested in MesKit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆10Jan 21, 2023Updated 3 years ago
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14May 28, 2019Updated 7 years ago
- R package to do enrichment analysis for neoantigens☆13Feb 21, 2022Updated 4 years ago
- Easily Process a Batch of Cox Models☆23Jul 26, 2025Updated last year
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A framework to infer mutational signatures in cancer over time☆58Jul 9, 2019Updated 7 years ago
- Clonality Inference in Multiple Tumor Samples using Phylogeny☆15May 8, 2015Updated 11 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Jan 15, 2020Updated 6 years ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆68Jun 30, 2026Updated last month
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆26Jul 17, 2026Updated 3 weeks ago
- An R package to time somatic mutations☆73Dec 12, 2020Updated 5 years ago
- Contribution of systemic and somatic factors to clinical response and resistance in urothelial cancer: an exploratory multi-omic analysis☆24Oct 31, 2017Updated 8 years ago
- Somatic copy variant caller (CNV) for next generation sequencing☆79Sep 12, 2024Updated last year
- Adapted from the GATK best practice guide to preprocess whole exome sequencing (WES) data☆11Sep 4, 2019Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Pan-cancer quantification of neoantigen-mediated immunoediting in cancer evolution☆14May 4, 2022Updated 4 years ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆99Aug 1, 2024Updated 2 years ago
- Fork of the Polysolver project☆33Nov 21, 2019Updated 6 years ago
- Workflow for Sequenza, cellularity and ploidy☆28Jun 11, 2026Updated 2 months ago
- GCAP (Gene-level Circular Amplicon Prediction) firstly implements extrachromosomal DNA detection from whole-exome-sequencing (WES) data a…☆21Jul 1, 2026Updated last month
- Curated list of TCGA resources☆61Nov 10, 2017Updated 8 years ago
- ☆18Jan 30, 2023Updated 3 years ago
- ☆13Sep 24, 2025Updated 10 months ago
- DISCOVER co-occurrence and mutual exclusivity analysis for cancer genomics data☆33May 1, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- [source] CELLO - Cancer EvoLution toolbox for LOngitudinal data☆17Aug 24, 2020Updated 5 years ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Feb 17, 2021Updated 5 years ago
- Automate Absolute Copy Number Calling using 'ABSOLUTE' package☆41Nov 28, 2023Updated 2 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Aug 30, 2019Updated 6 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Jan 18, 2018Updated 8 years ago
- 🦀 Tumor growth simulation in C++/R☆20Jun 22, 2026Updated last month
- DriverPower☆26Jan 18, 2025Updated last year
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆14Jun 18, 2026Updated last month
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆103Jul 24, 2026Updated 2 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Molecular analysis of pre-invasive lung cancer samples☆14Jan 18, 2019Updated 7 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆54Feb 12, 2018Updated 8 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Apr 16, 2021Updated 5 years ago
- Rscripts collection for ploting in daily research life☆10Jan 15, 2021Updated 5 years ago
- Interactive Differential Expression Analyzer☆37Sep 7, 2020Updated 5 years ago
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆13Dec 6, 2021Updated 4 years ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22May 21, 2024Updated 2 years ago