Niinleslie / MesKitLinks
A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations
☆35Updated 3 years ago
Alternatives and similar repositories for MesKit
Users that are interested in MesKit are comparing it to the libraries listed below
Sorting:
- Utility functions for FACETS☆39Updated 3 weeks ago
- DriverPower☆26Updated 10 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated last month
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago
- knowledge-based genotyping of cancer hotspots from the tumor BAM files☆21Updated 3 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Updated 7 years ago
- Bead-based single-cell atac processing☆33Updated 4 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- An R package for time course sequencing data analysis☆20Updated 2 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Updated 5 years ago
- An R package to time somatic mutations☆64Updated 4 years ago
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆13Updated 3 months ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated 2 weeks ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14Updated 6 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆41Updated last year
- R package wrapping bedtools☆44Updated 8 months ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- An R for fast and flexible DNA methylation analysis☆34Updated last month
- ☆15Updated 2 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- ☆34Updated this week
- CNV analysis workflow code for the manuscript☆13Updated 5 years ago
- Extract Sequence from Genome According to Annotation File☆38Updated 7 months ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆22Updated 6 years ago
- Code accompanying "The evolutionary history of 2,658 cancers", Nature 578, 122–128 (2020)☆17Updated 5 years ago