harbourlab / uphyloplot2Links
Draw phylogenetic trees of tumor evolution
☆80Updated last year
Alternatives and similar repositories for uphyloplot2
Users that are interested in uphyloplot2 are comparing it to the libraries listed below
Sorting:
- Code repository for single cell RNA-seq☆35Updated 4 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆68Updated 8 months ago
- Single cell RNA-seq analysis bundle☆35Updated 5 years ago
- Functions for single cell data analysis☆32Updated 4 years ago
- Code for reproducing the analysis in Gavish et al. "The transcriptional hallmarks of intra-tumor heterogeneity across a thousand tumors".☆117Updated 10 months ago
- STARTRAC(Single T-cell Analysis by Rna-seq and Tcr TRACking)☆107Updated 2 months ago
- Inference of cell-cell communication from single-cell RNAseq data☆48Updated 2 months ago
- Inferring CNV data from single cell ATAC seq☆23Updated 2 weeks ago
- Analysis of cell-cell communication at single-cell resolution☆101Updated 10 months ago
- Infer Copy Number Alterations and Clonality in (Single-Cell) RNA-Seq Data☆41Updated last year
- Create cisTarget databases☆52Updated 3 weeks ago
- Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organiz…☆39Updated 3 years ago
- Collection of scripts for analysis of pan fetal immune atlas☆27Updated 2 years ago
- Estimation of Single-Cell Potency with Single Cell Entropy☆41Updated 2 years ago
- ☆62Updated 5 years ago
- MERCI for tracing of mitochondrion transfer between single cancer and T cells☆22Updated last year
- Single-cell multi-omics analysis reveals regulatory programs in clear cell renal cell carcinoma☆79Updated 8 months ago
- SCDC☆45Updated 3 weeks ago
- A portable and fast single cell type identifier☆64Updated 4 years ago
- This repository contains scripts to identify healthy and malignant cells from scRNAseq with CloneTracer and process data from Optimized 1…☆26Updated 8 months ago
- ☆44Updated 11 months ago
- ☆32Updated 3 years ago
- Gene set enrichment analysis for single-cell RNAseq data☆28Updated 2 years ago
- Accurate and fast cell marker gene identification with COSG☆46Updated 3 months ago
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 7 months ago
- A R package for advanced single cell data viz☆67Updated last year
- ☆46Updated 3 years ago
- Feature Ranking in (possibly large) Clustered Single Cell Data☆40Updated 4 years ago
- ☆53Updated 9 months ago
- ☆41Updated 4 years ago